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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgccatttcttccctttctatttcatgttgcaatcccgatgttcttagccagtgtcaatttgttaactgtgaattttcacctgatctggaaggta...

Basic information

species Zea mays
transcript GRMZM2G147500_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147500_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g14460.1 (Oryza sativa), 5'ss of exon 3
GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgccatttcttccctttctatttcatgt-tgcaatcccgatgttcttagcca---gtg-tcaatt--tgttaactgtgaatt-ttcacctgatctggaaggta
|| |||||||| ||||| || |||||||||||||| || || |||||||| ||| | || ||||||||| |||||||||| ||||| | ||| |||||||| |     || |  || || | ||||  ||  | ||      |||   |||  |    ||| ||| ||  | |||  |  ||| |   |||| ||||||       
GTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCGgtgag-atgtttcccccctttaccatttactgcgtccatgtttaatggagttactcgaatgtgctcagttagtattagttaagaactgcacaccagatctg-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31611780|gb|CD568402.1|CD568402
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122097|gb|FL004251.1|FL004251
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|33094171|gb|CF054165.1|CF054165
EST:     CGACAAAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122868|gb|FL004257.1|FL004257
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122100|gb|FL004254.1|FL004254
EST:     GACAGAGGGACATTTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: GACAGAGGGACATT-GAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|33102758|gb|CF062718.1|CF062718
EST:     CGACAAAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211124438|gb|FL004293.1|FL004293
EST:     GACAGAGGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: GACAGAGGG-ACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211124442|gb|FL004297.1|FL004297
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|22715261|gb|BU197668.1|BU197668
EST:     CGGCAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211124431|gb|FL004286.1|FL004286
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122872|gb|FL004261.1|FL004261
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122877|gb|FL004266.1|FL004266
EST:     -ACAAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCASST                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: GACA-GAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211123651|gb|FL004271.1|FL004271
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGWTGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211124436|gb|FL004291.1|FL004291
EST:     GACAGAGGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAAGAATGGATG
genomic: GACAGAGGG-ACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGA-GAATGGATG
EST: gi|211123653|gb|FL004273.1|FL004273
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122095|gb|FL004249.1|FL004249
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211124441|gb|FL004296.1|FL004296
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211124440|gb|FL004295.1|FL004295
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|26559425|gb|CA831660.1|CA831660
EST:     CGGCAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122101|gb|FL004255.1|FL004255
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|33095529|gb|CF055523.1|CF055523
EST:     CGACAAAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211123664|gb|FL004284.1|FL004284
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211125213|gb|FL004301.1|FL004301
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211122098|gb|FL004252.1|FL004252
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTC
EST: gi|211124432|gb|FL004287.1|FL004287
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211124434|gb|FL004289.1|FL004289
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|211123652|gb|FL004272.1|FL004272
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATAGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|148964224|gb|EE015404.2|EE015404
EST:     CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
EST: gi|26558350|gb|CA830585.1|CA830585
EST:     CGGCAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG                         GATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC
genomic: CGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCGgtgcgtgcca ... ccatgttcagGATGCAATCTGATATCTCACGGCTGGAAGCTAAGATTGAGAGAATGGATGC