Sequence
atgc intronic sequence ATGC exonic sequenceGCCTGTTTACTTCAATGAGCCACTTTCATCGTTACAAAAATGTTTTGAAGATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGGgtatttacttcttcctctccctgctagcattttcattcatgcgcacatctctctaatatgttgaatgcaagtagctataaacacttggtttattagattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G147332_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g49770.2 (Oryza sativa), 5'ss of exon 4
GCCTGTTTACTTCAATGAGCCACTTTCATCGTTACAAAAATGTTTTGAAGATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGGgtatttacttcttcctctccctgct-agcattttcatt------catgcgcacatctctctaatatgttgaatgcaagtagctataaacacttggtttattagattt
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GCCTGTTTATTTCAATGAACCACTCTCATCTTTACAGAAATGCTTTGAAGATCTTGAGTATTCCTACCTTATTGATCGCGCTTATGAATGGGGGAAAAGGgtattt-cttcttcctttcactatttaatatgttcatgggcatgcatgtgcattttcaaataacattccaaataaaagcaaat-taagagtttgaaccgtgt-----
upper sequence: GRMZM2G147332_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g03790.t01 (Vitis vinifera), 5'ss of exon 4
GCCTGTTTACTTCAATGAGCCACTTTCATCGTTACAAAAATGTTTTGAAGATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGGgtatttacttcttcctctccctgctagcattttcattcatgcgcacatctctctaatatgttgaatgcaagtagctataaacacttggtttattagattt-----
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TCCTGTTTACTTTAATGAGCCTCTCTCTTCTCTGCAAAAATGTTTTGAAGATCTGGAATATTCATATCTTCTTGATCGGGCTCATGAATGGGGAAAAATGgtgagt--ttggataagaacttggtagtctttt--tctgtggtgtcattgattggtaagcatgcctttgtagaact-tgtgcgttttatttatatcatactgtatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32806257|gb|CD958491.1|CD958491EST: ATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGG GGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGA
genomic: ATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGGgtatttactt ... ttatacctagGGGAATAGTCTTATGAGGATTCTTAGCGTAGCAGCATTTGCTGTTTCTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTGTTTACTTCAATGAGCCACTTTCATCGTTACAAAAATGTTTTGAAGATCTGGAGTATTCCTACCTTATTGATCGTGCATCTGAATGGGGGAAAAGGgtatttacttcttcctctccctgctagcattttcattcatgcgcacatctctctaatatgttgaatgcaagtagctataaacacttggtttattagattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctccc