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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaatgcatcttcaagctggaaatatgatctcttcattgtttgtaccattgactggtcaattatattacactcttatttttcttgctataaatttgcag

Basic information

species Zea mays
transcript GRMZM2G147145_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g49810.1 (Oryza sativa), 5'ss of exon 7
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaatgcatc-ttcaagctggaaatatgatctcttcattgtttgtaccattgactggtcaattatattacactcttatttttcttgctataaatttgcag
||||||| | ||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||  |||  |   |||||  ||||| |   || ||||     |    ||     |      | |      | |||  |  ||||  | | ||  |       
TGAGAACTTAGAAAATCCTGATCTTTATCACTATGCCCTTTTTTCGGACAATGTTTTGGCAGCTTCAGTTGTGGTGAACTCAACCATCATGAATGCAAAGgtaagtgcaatctagagttcaatttggaattgcaatttcttggcaatg---actgagaaacatgtattcggtaaaaactgctcatttttctaccatgcag------

upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G08910.1 (Glycine max), 5'ss of exon 5
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaa-tgcatcttcaagctggaaatatgatctcttcattgtttgtaccattgactggtcaattatattacactcttatttttcttgctataaatttgcag
||||||  |||| |||||   |||||| || || || || ||||| |||||||| ||||| ||||| ||||| ||||||||||| || |||||||| ||||| | ||  | ||  | || || |     |||  |     |   ||   || | ||||  |  |    || ||| ||        |  ||||    |       | 
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCAAAGgtgacttggactgtctttttaacc-----ataccagtatgtgtgtgcaagtgc-attgtttccttttatagattgcaaataatggtgccttgaaggagcaccaaaa

upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G40260.1 (Glycine max), 5'ss of exon 8
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaatgcatcttcaagctggaaatatgatctcttcattgtttgtaccattgactggtcaattatattacactcttatttttcttgctataaatttgcag-----------------------------------------------------------------------------------------------
||||||  |||| ||||||  ||| || |||||||| || |||||||||||||| ||||| ||||| ||||| ||||||||||| ||  ||||||| ||||| | || ||      || |   |   | | || | | | ||| || | ||    |      | |  || || |        || | |||||  |  |    | |                                                                                               
TGAGAATTTGGAGAATCCTAGTCTCTATCATTATGCCCTGTTCTCGGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTGTGAATGCAAAGgtgacttaaacagtcttttaccataccagtgtg-tatgtgcat-gtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcag

upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaa-tgcatcttcaagc-tggaaatatgatctc-----ttcattgtttgtaccattgactggtcaattatattacact---cttatttttcttgctataaatttgcag--------------------------------------------------------------------------
||||||  |||| |||||   |||||| || || || || ||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| | ||    ||  | || || | |   | |||           ||||||||||       |   | |  ||| |   | |  |   | |  |   | |    |  || || |                                                                           
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag

upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G45750.1 (Glycine max), 5'ss of exon 7
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaatgcatcttcaagctggaaatatgatctcttcattgtttgtaccattgactggtcaat-tatattacactcttatttttcttgctataaatttgcag-----------------------------------------------------------------------------------------------
||||||  |||| ||||||  ||| || |||||||| || |||||||||||||| ||||| ||||| ||||| ||||||||||||||  ||||||| ||||| | ||  |      ||     |   | | || | | | ||| || ||||   |  | |  |   | || || |        || | |||||  |  |    | |                                                                                               
TGAGAATTTGGAGAATCCTAGTCTCTATCATTATGCCCTGTTCTCGGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACCATTGTGAATGCAAAGgtgacttggactgtctttttccataccagtgtg-tgtgtacat-gtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtag

upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT2G46480.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgtta-gtttaatgcatcttcaa-gctggaaatatgatctcttcattgtttgtaccattgactggtcaattatattacactcttatttttcttgctataaatttgcag
 |||||  |||| |||||  | |||||||| || ||||| ||||| || |||||  |||| ||||||||||| |||||||| ||  ||||||||||  |||| | | | ||| | |  | |  | || ||  || |   ||| |    ||  |      |||||    |||| |  ||                             
GGAGAATTTGGAGAATCCAAAACTTTACCACTACGCTCTCTTCTCTGATAATGTACTGGCTGCATCAGTTGTTGTCAACTCCACAGTCATGAATGCACAGgtaatgatcaatccctagtaattgttgcaagaataagtgctttaa-acttacaaggcctactgggt--ttatttggcag----------------------------

upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv15s0048g01300.t01 (Vitis vinifera), 5'ss of exon 8
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaatgcatcttcaagctggaaatatgatctcttcattgtttgtaccattgactggtcaattatattacactcttatttttcttgctataaatttgcag
||||||  ||||||||||  ||||||||||||||||||| ||||| || ||||| ||||| || |||||||| ||||||||||||||| ||||||| ||||| |  |   || || |     ||  | |   |     || | || |  |   ||   || | |  | | |   || | ||| | | |     ||  || | || 
TGAGAATTTGGAAAATCCAAATCTTTACCATTATGCTCTCTTCTCTGATAATGTATTGGCTGCTTCAGTTGTTGTCAACTCAACCATCTTGAATGCCAAGgtgaagt-ggtggatttatttactttatactagcatctttaagtgatcttcttatc--ctagact-taaaacaccagtattagtatcccc-taatttatctacat

upper sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S251_8V6.1 (Physcomitrella patens), 5'ss of exon 8
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaatgcatcttcaagctggaaatatgatctcttcattgtttgtac-----cattgactggtcaattatattacactcttattt-ttcttgctataaatttgcag
  | ||  ||||| |||||| | | | ||| |||||||||||||| |||||  ||||||||||| |||||||||| ||||| || || |  ||||| |||||       |||| | ||| |  | | |  ||      ||    ||||  |      | ||| || |  || ||      ||| ||||   || |||| |   || |    
AAATAAATTGGAAGATCCTGCTTTGTTCCACTATGCTCTTTTCTCTGACAACATTTTGGCAGCAGCAGTTGTGGTGAACTCCACTATTACCAATGCGAAGgt-------atgccttttctaaatagcagaatcccaattttgcagtttacaaacgaacgttgtcttgaaaaataggac-tacttttatcagtttttgccacgtatatc---