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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAGTTTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGgtttgttctgaatttctattacaattcacaatgtttcatgatatgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcag

Basic information

species Zea mays
transcript GRMZM2G146514_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146514_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g28270.1 (Oryza sativa), 5'ss of exon 4
GTGCAAGTTTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGgtttgttctgaatttctattacaattcacaatgtttcatgatatgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcag
 ||||| ||||||||||| ||||||||||| || ||||||||||| |||||||| ||||| ||||| ||| ||||||   | ||||||||| | || |||||||||||| |||||| ||||   || || ||   |  |   |   | | ||| |         | ||  | |||||| | | ||||| |||||| ||  |||| | |||||||||||  |||
ATGCAAATTTGGAGCAACATGCAAGTTTCACCACCCCCGAGAAAAAGCTGCAATTGCAACCCGAGTACAGCTGAATGCTTTAGGCTACCCATTGCGGCCGgtttgttctaaatttccattatcttttactattacttgttggacttaaggatagtt--------cattattctgcaacttctctgcaatatttgttttagttacctaaattttattaccacag

upper sequence: GRMZM2G146514_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g21700.1 (Oryza sativa), 5'ss of exon 4
GTGCAAGTTTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGgtttgttctgaatttctattacaattcacaatgtttcatgat-atgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttg-tgttgtttacttgaattttattactgcag
|||||||||||| ||||| |||||||||||||| ||| | || ||||||||| | ||||  || || ||||| ||||  || ||||||||  | || |||||||||||   | ||||||   |||| |   |||  | ||||     |  | || |||  ||    ||  || |  | | |   ||||||||| | | |  || ||||| | |||||||||||||
GTGCAAGTTTGGTGCAACATGCAAGTTTCATCACCCCAGGGAGAAGGCTGCACTTGCAAACCGTGTACAGTTAAATGTTCTAGGCTACCCGATGCGTCCGgtttgttccataattctat---aattta-gttgtcacctgattgcttaatcgtaatatc-tgttctctacctct-tagcttgcatgcaagattagctttcattaacttgcagtttattactgcag

upper sequence: GRMZM2G146514_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 4
GTGCAAGTTTGGAGCAACTTGCAAGTTTCATCATCCCCGAGAAAAGGCTGCAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGgtttg-ttctgaatttctattacaattcacaatgtttca--tgatatgaatgcatactattgtgccgcctttctatgcaacatttttgcaagatttgtgttgtttacttgaattttattactgcag
 |||||||||||||| || |||||||||||||||||  |||| ||||||| ||| ||     |||||   || |||    | ||||| ||||| || |||||| | || |  |||||| ||   | |||   |  |  |  |||| ||||||    | |   ||      || |      |||||   | || || |  |     | ||                 
TTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTTCTTTAAATATTTTAGGCTATCCACTGCGGCCGgttcgattttttatttctcttt--actcatgttactggaattgatttgaatgtgc-caaccatgttaggctttt------catttcccccagtttggattcaccaaatt-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56691598|gb|CX129501.1|CX129501
EST:     CAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCG                         AATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGA
genomic: CAATGGCAACTCGAGTTCAGTTGAATGAACTGGGCTACCCACTCCGCCCGgtttgttctg ... attactgcagAATGAAAAAGAGTGTGCTTATTATTTAAGAACAGGGCAGTGCAAGTTTGGA