Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGGACATGATGAGATTAGTATCAAGGCCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagtagtagcctcttctgccttgtagtgctgctattggaatttttattaatgtctcatttttttaatctgtcacttcactgttcgtccag

Basic information

species Zea mays
transcript GRMZM2G146472_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146472_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g06760.1 (Oryza sativa), 5'ss of exon 3
GAAAATGGACATGATGAGATTAGTATCAAGGCCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagtagtagcctcttctgccttgtagtg-ctgctattggaatttttattaatgtctcatttttttaatctgtcacttcactgttcgtccag
|||||||| ||||||||||||   ||||| || |||||| | ||||| ||||||||||| |||||||||||||||||||||||| ||  ||     | ||||  ||| ||| |  ||  ||    | || || ||         |||||| ||  |    ||  | | || || |||
GAAAATGGGCATGATGAGATTGTCATCAAAGCTATGGGAAGAGCCATCAATAAGACAGTCATGGTTGTTGAATTGATCAAGgttagtgctaagtatcacttccacctagtaatatctaataccaaagttattctt-------tgttttttcaacttact-ctaaattttttgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32830032|gb|CD969710.1|CD969710
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGCTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|28930818|gb|CB334179.1|CB334179
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32829230|gb|CD968908.1|CD968908
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|15214979|gb|BI431119.1|BI431119
EST:     TGGTTG-TGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: TGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|22542105|gb|BU092543.1|BU092543
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32841469|gb|CD981150.1|CD981150
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|19822219|gb|BQ048243.1|BQ048243
EST:     TATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTG-TGATATC
genomic: TATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32839778|gb|CD979459.1|CD979459
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|76930615|gb|DV172453.1|DV172453
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGACATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|24773481|gb|CA408735.1|CA408735
EST:     TTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: TTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32831818|gb|CD971496.1|CD971496
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|211499004|gb|FL379821.1|FL379821
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTNGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32828756|gb|CD968434.1|CD968434
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|24774011|gb|CA409265.1|CA409265
EST:     GGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCACGAACACTGCTACTGAATCTGTTGATAT
genomic: GGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCA-GAACACTGCTACTGAATCTGTTGATAT
EST: gi|76918295|gb|DV167234.1|DV167234
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|31356464|gb|CD440821.1|CD440821
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|31359395|gb|CD443752.1|CD443752
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|148933612|gb|EC877493.2|EC877493
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|67031337|gb|CO460086.1|CO460086
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|24961547|gb|CA483556.1|CA483556
EST:     GGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: GGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|31363502|gb|CD447859.1|CD447859
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|31354397|gb|CD438754.1|CD438754
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|24773581|gb|CA408835.1|CA408835
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|29577050|gb|CB617162.1|CB617162
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|149078577|gb|EE167361.2|EE167361
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|148939817|gb|EC884519.2|EC884519
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32829344|gb|CD969022.1|CD969022
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|60344926|gb|DN211899.1|DN211899
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32839644|gb|CD979325.1|CD979325
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32839620|gb|CD979301.1|CD979301
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|148942045|gb|EC887040.2|EC887040
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|31364520|gb|CD448875.1|CD448875
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGGCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|149101884|gb|EE287439.2|EE287439
EST:     CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAG                         AGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
genomic: CCATGGGACGGGCCATAAATAAGACAGTTATGGTTGTTGAATTGATCAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATATC
EST: gi|32839645|gb|CD979326.1|CD979326
EST:     TAAATAAGACAGTTAT-GTTGTTGAATTG-TCCAAG                         AGAAGGGTTGAAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATAT
genomic: TAAATAAGACAGTTATGGTTGTTGAATTGAT-CAAGgttggtagta ... gttcgtccagAGAAGGGTTGGAGGTCTTCATCAGAACACTGCTACTGAATCTGTTGATAT