Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatactctcttcctttctattgttgctatgagcactttatcttatacaatctatagtctgagcaagatctttttctacatttctcttttgcag

Basic information

species Zea mays
transcript GRMZM2G146374_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285799|gb|CF075594.1|CF075594
EST:     GGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: GGCTCTGTCTGTTTGGATGTCATAAACCAGACATGG-AGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|60400981|gb|DN233788.1|DN233788
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|440773|gb|T14794.1|T14794
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|31364283|gb|CD448638.1|CD448638
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|38229847|gb|CF920160.1|CF920160
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|32911553|gb|CF016365.1|CF016365
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|34391369|gb|CF384597.1|CF384597
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|4217768|gb|AI391764.1|AI391764
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211536458|gb|FL178297.1|FL178297
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATG
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATG
EST: gi|211536457|gb|FL178296.1|FL178296
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTT
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTT
EST: gi|32831160|gb|CD970838.1|CD970838
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGT
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGT
EST: gi|32944457|gb|CF049276.1|CF049276
EST:     TGGCTCTGTCTGTTTGGATGCCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACC
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACC
EST: gi|32829669|gb|CD969347.1|CD969347
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTA
EST: gi|32943661|gb|CF048480.1|CF048480
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|33285782|gb|CF075577.1|CF075577
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|71325319|gb|DR799337.1|DR799337
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|453315|gb|T15289.1|T15289
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211073942|gb|FL168131.1|FL168131
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|31628353|gb|CD526566.1|CD526566
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|4217837|gb|AI391833.1|AI391833
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211536455|gb|FL178294.1|FL178294
EST:     TGGCTCTGTCTGTTTGGATGTCATAAAC-AGACATGGAGCCCCATGTTTG                         ATCTAGTAAATGTTTTTTGAGGTATCCCTTC
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTT-GAAGTATTCCTTC
EST: gi|32910699|gb|CF015511.1|CF015511
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTG
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTG
EST: gi|32856672|gb|CD996353.1|CD996353
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCTGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|4573150|gb|AI438501.2|AI438501
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211477511|gb|FL096882.1|FL096882
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|4217951|gb|AI391947.1|AI391947
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|33771123|gb|CF272784.1|CF272784
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|38229799|gb|CF920112.1|CF920112
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211073944|gb|FL168133.1|FL168133
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|71432138|gb|DR813188.1|DR813188
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|71769127|gb|DR967064.1|DR967064
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|83278687|gb|DV942695.1|DV942695
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211477514|gb|FL096885.1|FL096885
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|4217937|gb|AI391933.1|AI391933
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|32856738|gb|CD996419.1|CD996419
EST:     TGGCTCTGTCTGTTTGGATGTCATAGACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211536461|gb|FL178300.1|FL178300
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTAT-CCNTTCCACAGCTGTTGCTGTACCCA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCC-TTCCACAGCTGTTGCTGTACCCA
EST: gi|16925233|gb|BM078301.1|BM078301
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211073937|gb|FL168126.1|FL168126
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211073943|gb|FL168132.1|FL168132
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|32912993|gb|CF017805.1|CF017805
EST:     TGGCTCTGTCTGTTTGGATGTCGTAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|32829667|gb|CD969345.1|CD969345
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGGCATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGT
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGT
EST: gi|78082922|gb|DV511315.1|DV511315
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211539455|gb|FL178302.1|FL178302
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTAC
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTAC
EST: gi|211536459|gb|FL178298.1|FL178298
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|211073941|gb|FL168130.1|FL168130
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAA
EST: gi|511342|gb|T23320.1|T23320
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATNTTTTTAAAGTATTCCCTTCCACAGCTTGTTGCTGTACCC
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCC-TTCCACAGCT-GTTGCTGTACCC
EST: gi|211477513|gb|FL096884.1|FL096884
EST:     TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTG                         ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCACA
genomic: TGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACC-CA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 338

GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 857

GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 839

GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 439

GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatac ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTGCTGTACCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTGGCTCTGTCTGTTTGGATGTCATAAACCAGACATGGAGCCCAATGTTTGgtgagaatactctcttcctttctattgttgctatgagcactttatcttatacaatctatagtctgagcaagatctttttctacatttctcttttgcag

- - - - - - - - - - - - - - - - -  CATGGA