Sequence
atgc intronic sequence ATGC exonic sequenceCGATGTGTATAGCTTTGGTGTTGTGTTCCTTGAACTTATCACGGGGCGTAAAGCAATTGACAATACTAAGACCCAAGGGGAGCAAAATTTAGTGGCATGGgtatgtttatcttatttcattgcatttagcttttctttatgtcagtaaaacacctatgcttgcttatagatgaatgccttgtagttcttcaactcatctg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G145709_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g71000.1 (Oryza sativa), 5'ss of exon 4
CGATGTGTATAGCTTTGGTGTTGTGTTCCTTGAACTTATCACGGGGCGTAAAGCAATTGACAATACTAAGACCCAAGGGGAGCAAAATTTAGTGGCATGGgtatgtttatcttatttcattgcatttagcttttctttatgtcagtaaaacacctatgcttgct-tatagatgaatgccttgtagttcttcaactcatctg
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CGATGTCTATAGCTTTGGTGTTGTTTTCCTCGAACTGATTACAGGGCGCAAAGCAATTGACAACACAAAGCCACAGGGGGAGCAAAACCTAGTGGCATGGgtatgtttttatactatacttgcatc-ataaatgcataataaatatatgccagtgacacccattgtatgcattcttcttttgaaaataaaagcattacatg
upper sequence: GRMZM2G145709_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 4
CGATGTGTATAGCTTTGGTGTTGTGTTCCTTGAACTTATCACGGGGCGTAAAGCAATTGACAATACTAAGACCCAAGGGGAGCAAAATTTAGTGGCATGGgtatgtttatcttat--------------ttcattgcatttagcttttctttatgtcagtaa-aacacctatgct-----tgcttatagatgaatgccttgtagttcttcaactcatctg--------------------------------------
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TGATGTTTATAGTTTTGGTGTCGTTTTCCTTGAACTTATCACAGGGCGTAAAGCTATTGATAACAATCGGGCTGCTGGTGAGCATAACCTTGTTGCATGGgtaagtgtttcttttctgcattttcccaatttattggcttttattgtactttttctttttaacaatttccatgaaggtgatgcttgcatatactcaatttattattatacaagatttctcttctttttccctttattttgtgggatatgaatctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74237439|gb|DT645353.1|DT645353EST: AAGCAATTGACAATACTAAGACCCAAGGGGAGCAAAATTTAGTGGCATGG GCTCGTCCACTGTTCAAGGACCGAAGGAAATTCCCTAAAATGGCTGATCCA
genomic: AAGCAATTGACAATACTAAGACCCAAGGGGAGCAAAATTTAGTGGCATGGgtatgtttat ... taatctgcagGCTCGTCCACTGTTCAAGGACCGAAGGAAATTCCCTAAAATGGCTGATCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGATGTGTATAGCTTTGGTGTTGTGTTCCTTGAACTTATCACGGGGCGTAAAGCAATTGACAATACTAAGACCCAAGGGGAGCAAAATTTAGTGGCATGGgtatgtttatcttatttcattgcatttagcttttctttatgtcagtaaaacacctatgcttgcttatagatgaatgccttgtagttcttcaactcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaca