Sequence
atgc intronic sequence ATGC exonic sequenceTGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAGGACTGGCTTGGAAATCACAACCTGTGGAAAAAGGAGCAAGgtggatcactcaaccgtggagcatttgttacttggtaacctaatgcttttgtagctacattaaagcaaattagtcatgaatggtagtgtaactgttagcg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G143525_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g24594.5 (Oryza sativa), 5'ss of exon 4
TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAGGACTGGCTTGGAAATCACAACCTGTGGAAAAAGGAGCAAGgtggatcactcaaccgtggagcatttgttacttggtaacctaatgcttttgtagctac--attaaagcaaattagtcatgaatggtagtgtaactgttagcg------------------------------------------------------------
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--------------------------TCATGGAAGTACTTCAAGAGTTTGAAGACTGGATCGAACATCACAAATTTTGGAAAAAGGAGCAAGGAGGAGCACTCAACAGTGCAGCATTCATCACTTGgtaatttattgctgctaatgttataaattttagggaagtactgatatattctttcagttatgccattgcacttgtgcaaaaaagatgttatttgtacttgtagtttgatagtgtctgcattcttttag
upper sequence: GRMZM2G143525_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g24594.6 (Oryza sativa), 5'ss of exon 3
TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAGGACTGGCTTGGAAATCACAACCTGTGGAAAAAGGAGCAAGgtggatcactcaaccgtggagcatttgttacttggtaacctaatgcttttgtagctaca--ttaaagcaaattagtcatgaatggtagtgtaactgttagcg--------------------------------
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--------------------------TCATGGAAGTACTTCAAGAGTTTGAAGACTGGATCGAACATCACAAATTTTGGAAAAAGGAGCAAGGAGGAGCACTCAACAGTGCAGCATTCATCACTTGgtaatttattgctgctaatgttataaattttagggaagtactgatatattctttcagttatgccattgcacttgtgcaaaaaagatgttatttgtacttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|38687505|gb|CK144536.1|CK144536EST: AATCACAACCTGTGGAAAAAGGAGCAAG TGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
genomic: AATCACAACCTGTGGAAAAAGGAGCAAGgtggatcact ... aatgtggcagTGGAAACTGGGATTTGAAGACAAAGGTCCCTGAGCAGTGCAAGGTTTCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTTGGCATGACACTGCTACCCCTTTCAAGCAAGTGCTGCAAGAGTTTGAGGACTGGCTTGGAAATCACAACCTGTGGAAAAAGGAGCAAGgtggatcactcaaccgtggagcatttgttacttggtaacctaatgcttttgtagctacattaaagcaaattagtcatgaatggtagtgtaactgttagcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaaa