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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag

Basic information

species Zea mays
transcript GRMZM2G143213_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 4
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactca--atacatatctatgg-aagtatttttcag
|||||| || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      ||||   | ||  || | ||| |           ||||  || || |  ||  | | |  | || |  |           | ||  |   ||    ||| ||            | ||||||| |    ||  |||| || || ||||||  ||  || ||||||| |||||||||||||
TCAGAATTTATTGATAGATCGGCGTACTAATACACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACATTTACTCATGAGgta------ctata--gatttgtgttcaacat-----------tttg--ttttcttcataaagtacatttttttttcg-----------tcataaagttcatt--tttcat------------ttaccttttcta---tacactag-cacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g02680.1 (Oryza sativa), 5'ss of exon 3
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactca--atacatatctatgg-aagtatttttcag
|||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||      ||||   | ||  || | ||| |           ||||  || || |  ||  | | |  | || |              | ||  |   ||    ||| ||            | ||||||| |    ||  |||| || || ||||||  ||  || ||||||| |||||||||||||
TCAGAATTTATTGATAGATCGGCGTACTAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGCACGTTTACTCACGAGgta------ctata--gatttgtgttcaacat-----------tttg--ttttcttcataaagtacattttttttcg------------tcataaagttcatt--tttcat------------ttaccttttcta---tacactag-cacattaactcacaatggatgtctatgggaagtatttttcag

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G03470.1 (Glycine max), 5'ss of exon 4
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag
 ||||| |||||||||||||| |||| |||| |||||||||||||||| ||||| || || ||||||||||| ||||||||| | || ||||| ||||||||   | |||||   |   |   ||||  || |  |  |        ||| |   |   | |||     | ||      |     ||||| ||  || |||      |                                                                              
ACAGAATTTGTTGATAGATCGCCGTACTAATTCACTGAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGGACCTTTACACATGAGgtttgtgtgctaccttatatga-gcttctctagtcattgatgcagataataaaattgaaatggattggctttttcacaag-----aaaatgat--atgccattatgct------------------------------------------------------------------------------

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G14390.1 (Glycine max), 5'ss of exon 4
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag
 ||||| |||||||||||||| |||| |||| |||| ||||||||||| ||||| || || ||||||||||| ||||||||| | |||||||| ||||||||   | | |||     |||||               | |   ||  | | |||| ||      || || ||||  | |  ||                 | |  ||  ||    |||| ||||  |||| || |||                                                 
ACAGAATTTGTTGATAGATCGCCGTACTAATTCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGCATTCCTGTCAGGACATTTACACATGAGgtttgtgtcctac----cttat---------------atgtgcttctagtcatcc-atgcatataataaaattgaaatgaatg-----------------agcttttccatgagaatatgacatgcccttatgctgt-------------------------------------------------

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G25320.1 (Glycine max), 5'ss of exon 3
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctg--cttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag
 ||||| ||||||||||||||  | | |||||||||||| |||||||| ||||| || |||||||| ||||||||||||||  | |||||||| ||||||||   | |||||   ||  ||   | |||| ||||   |       || || | |   ||||  |     || |    || |  |  | | | ||| | |                                                                                        
ACAGAATTTGTTGATAGATCGCAGCACTAATGCACTGAAACTTGCAGATTTTGGATTGGCCAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccttgtactgggttcttaccttggatataa----ttaaactttgaaattaatgggcttatgt-actagagaagaaatactcatgcagcatttt-----------------------------------------------------------------------------------

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G08330.1 (Glycine max), 5'ss of exon 4
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgct-taacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag
 ||||| ||||||||||||||  | ||||||||||| || |||||||| ||||| || || ||||| ||||||||||||||  | |||||||| ||||||||   | |||||  |||      | | | || |  || |      || |||| |   ||||  |   | || |  |   |  |   | | | ||| | |                                                                                        
ACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAACTTGCAGATTTTGGATTGGCTAGGGCTTTTGGAATTCCTGTTAGGACATTTACACATGAGgtttgtgtgctaccctgtactgggttctgaccttggatataa---ttaaattttgaaattaatgcgcatatgtactagagtataa-atactcatgcagcatttt-----------------------------------------------------------------------------------

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT3G48750.1 (Arabidopsis thaliana), 5'ss of exon 5
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgta--aatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag
 ||||| |||||||| ||||| || |  ||  ||||||||||||| || |||||  | ||||| ||||| || || |||||| | ||||||||||||||||||  ||   ||| |  | ||| ||  |    |   |        | |||| | |  |    ||    |    || |||| |      |||||| | ||   |||                                                                                   
ACAGAATTTGTTGATTGATCGCCGCACAAACTCACTGAAGCTTGCTGATTTTGGACTGGCCAGAGCATTCGGTATCCCTGTCAGGACATTTACTCATGAGgtaccaaagagctttattccttgttcatatgttcccgt-------tatgaaatcttttggctggctgcattccttatgagtgtaatgtaaattaagtattataccac---------------------------------------------------------------------------------

upper sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 5
TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgctatgctgcttattgcttaacttgagaaagggagtttgaattatcctattagggaaaaaatattgtgaggggtgccaaaattatggatcccaccgattttatacccatataacataaccttttgttgtctattctagtcatatcaactcaatacatatctatggaagtatttttcag
 ||||||||  | |||||||| ||||  |||||| | ||||| ||||||||||| || || || |||||||| ||||||||  | |||||||| |||||||||   |   | |||      |   | | ||     |   || |||   |  || |     || |     ||  | |    |     | |     |||  | | ||||| | |                                                                         
CCAGAACTTACTCATAGATCGTCGTACCAATGCATTAAAGCTGGCAGACTTTGGATTGGCAAGAGCATTTGGTATTCCTGTTAGGACATTTACACATGAGgta---tcaatgtgcaatccgtg--tgacctcttccacatgatttt---tcctctttacttggtatttgcatctttaataatatttgatt-----atcatatcaattttttgc-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166704|gb|BM336543.1|BM336543
EST:     CGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: CGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|21390004|gb|BQ528053.1|BQ528053
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|17929629|gb|BM266589.1|BM266589
EST:     AGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: AGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|60397283|gb|DN230099.1|DN230099
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|6020558|gb|AW065591.1|AW065591
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACACATGAG                         GTAGTGACATTATGGTACCAGAGCTCCAGAAATTCTTCTTGGAGCGAGACA
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTAC-AGAGCTCCAGAAATCCTTCTTGGAGCGAGACA
EST: gi|78074515|gb|DV502949.1|DV502949
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|18162372|gb|BM332211.1|BM332211
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|110194217|gb|EC876115.1|EC876115
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|31910663|gb|CD651537.1|CD651537
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|67024512|gb|CO453261.1|CO453261
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|18167215|gb|BM337054.1|BM337054
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|22542162|gb|BU092600.1|BU092600
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|78025082|gb|DV493469.1|DV493469
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCTTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|60398759|gb|DN231575.1|DN231575
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|5847313|gb|AW000392.1|AW000392
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACACATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|211268426|gb|FL478582.1|FL478582
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|60394332|gb|DN227202.1|DN227202
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|4967063|gb|AI692029.1|AI692029
EST:     CCGT-CATTT-CTCAT-AG                         GTAGTGACATTATGGT-CAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: CCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|27575994|gb|CA998688.1|CA998688
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|60394730|gb|DN227600.1|DN227600
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|32916297|gb|CF021109.1|CF021109
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|31909621|gb|CD651010.1|CD651010
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|78093070|gb|DV521444.1|DV521444
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|60398446|gb|DN231262.1|DN231262
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG
EST: gi|60344999|gb|DN211972.1|DN211972
EST:     TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACACATGAG                         GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTTCTTGGAGCGAGACAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 100

TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 80

TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 106

TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 47

TCAGAACTTGTTGATAGATCGGCGTAATAATGCACTGAAGCTTGCAGACTTTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtaaatttgc ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG