Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttcttctctcatccttcttcagtccagacatagttgaatccaaaggtttaagccattctggttatctacttagtgctgttattactttttagccaacattataaatttttgttctaccatgtttgatataagaaattctgaaaaaataataaaaaattctgctgcag

Basic information

species Zea mays
transcript GRMZM2G142768_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149083987|gb|EE173375.2|EE173375
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|13198669|gb|BG354471.1|BG354471
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|78090139|gb|DV518513.1|DV518513
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|71768772|gb|DR966709.1|DR966709
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|60350167|gb|DN217140.1|DN217140
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|71758859|gb|DR956796.1|DR956796
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|113702671|gb|EE680175.1|EE680175
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|93011702|gb|EB637222.1|EB637222
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|71433959|gb|DR815009.1|DR815009
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
EST: gi|94477809|gb|EB706767.1|EB706767
EST:     TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCG                         GTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA
genomic: TTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttct ... tctgctgcagGTCCACGATTCCAAGGGTCTCACAGACCCACAGCAGCTTGCACGAGAGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTTTGTAGGTTCAGTGAAGAGGCTCAAGATCATGAGAACCTCAGACGCCAAAGGTCTCGgttagtttcttctctcatccttcttcagtccagacatagttgaatccaaaggtttaagccattctggttatctacttagtgctgttattactttttagccaacattataaatttttgttctaccatgtttgatataagaaattctgaaaaaataataaaaaattctgctgcag

- - - - - - - -  TGAAGA
- - - - - - - - -  AAGAGG
- - - - - - - - - - - - - -  AGATCA