1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACAAAGATGGATATGTCAGTAAGAGTGAGATGATACAGGCAATAAATGAGACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTGgtgagtcatctcctctggcagcatcatccactctctaatttctattttattagtttttcaagaaaaagttagttggttttcactacaaccatcatatgtt...
species | Zea mays |
transcript | GRMZM2G142693_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTG AGGAAATGGATTGGGACAAGAATGGCACAGTGACCTTCAAGGGATTCCTTTEST: gi|211251412|gb|FL479558.1|FL479558
genomic: GACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTGgtgagtcatc ... gtgaatacagAGGAAATGGATTGGGACAAGAATGGCACAGTGACCTTCAAGGAATTCCTTT
EST: GACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTG AGGAAATGGATTGGGACAAGAATGGCACAGTGACCTTCAAGGAATTCCTTTEST: gi|78027345|gb|DV495732.1|DV495732
genomic: GACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTGgtgagtcatc ... gtgaatacagAGGAAATGGATTGGGACAAGAATGGCACAGTGACCTTCAAGGAATTCCTTT
EST: GACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTG AGGAAATGGATTGGGACAAGAATGGCACAGTGACCTTCAAGGAATTCCTTT
genomic: GACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTGgtgagtcatc ... gtgaatacagAGGAAATGGATTGGGACAAGAATGGCACAGTGACCTTCAAGGAATTCCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAAGATGGATATGTCAGTAAGAGTGAGATGATACAGGCAATAAATGAGACCATTGGAGGAGAGCGCTCTTCAGGGCGCATAGGCATGAGAAGATTTGgtgagtcatctcctctggcagcatcatccactctctaatttctattttattagtttttcaagaaaaagttagttggttttcactacaaccatcatatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaaa