1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACCTTGGCTTTGCCGCAGCAGATGAGTACTGCACTCCACGTGTTATTGATTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctacattctcaacatgcttatatttttacaactttttaggaacataagctgatccctttcatcttgtgacag
species | Zea mays |
transcript | GRMZM2G142030_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTTGATGGAG GTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTGEST: gi|71315834|gb|DR794582.1|DR794582
genomic: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctaca ... cttgtgacagGTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTG
EST: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAG GTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTGEST: gi|22818806|gb|BU498896.1|BU498896
genomic: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctaca ... cttgtgacagGTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTG
EST: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTTGATGGAG GTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTGEST: gi|211205538|gb|FL096683.1|FL096683
genomic: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctaca ... cttgtgacagGTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTG
EST: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTTGATGGAG GTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTGEST: gi|87157040|gb|DY401829.1|DY401829
genomic: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctaca ... cttgtgacagGTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTG
EST: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTTGATGGAG GTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTGEST: gi|33102015|gb|CF061975.1|CF061975
genomic: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctaca ... cttgtgacagGTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTG
EST: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTTGATGGAG GTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTG
genomic: TTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctaca ... cttgtgacagGTACGACCAAGCTTCACACTGAGCTGGAGGAGTTGACTGCACGTTTTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTTGGCTTTGCCGCAGCAGATGAGTACTGCACTCCACGTGTTATTGATTCTCTCAAGAAATACTCAGCAAGCACCTGCAGTGTTCGTGTCGATGGAGgtatgctacattctcaacatgcttatatttttacaactttttaggaacataagctgatccctttcatcttgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA