Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAGgtagatgattgttgatgcatcacagtagcttgtgcctgtgattttctactaaattgggcagatggatgaacattttacgtcataataattaaccattact...

Basic information

species Zea mays
transcript GRMZM2G141587_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 4
GATTTTGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAGgtagatgattgttgat-gcatcacagtagcttgtgcctgtgattttctactaaattgggcagatggatgaacattttacgtcataataattaaccattact
||||||||||||||| || ||||| ||||||||  | |||||||||||||| |||||| |||| |||| |  | | |  | |   |  |   | || |  | |  |  |||      |  |||||  || |     ||  |   | | |  ||   
GATTTTGTCGAGTCTGTATTCAGGGAGCGTTTGCATCTGGAACTACCAGACGCAGgtacatgactgttcacagtagcttaattcgtcat-tttctgctggtttcatggattttatgaaatgatgattatctactaccagcacgctgagcttttgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016008|gb|EB641528.1|EB641528
EST:     GTCCAGTCTTTACTCCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAG                         ACAATGGTGAAATCATTTGAAGTCACGGATTTACCGGTTCGTTCG
genomic: GTCGAGTCTTTACTC-AGGAAGCGTTTGTGTATGGAACTACCAGACTCAGgtagatgatt ... tcatccccagACAATGGTGAAATCATTTGAAGTCACGGATTTACCAGTTCGTTCG
EST: gi|76282808|gb|DV022376.1|DV022376
EST:     TGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAG                         ACAATGGTGAAATCATTTGAAGTCACGGATTTACCAG
genomic: TGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAGgtagatgatt ... tcatccccagACAATGGTGAAATCATTTGAAGTCACGGATTTACCAG
EST: gi|78078423|gb|DV506837.1|DV506837
EST:     TGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAG                         ACAATGGTGAAATCATTTGAAGTCACGGATTTACCAG
genomic: TGTCGAGTCTTTACTCAGGAAGCGTTTGTGTATGGAACTACCAGACTCAGgtagatgatt ... tcatccccagACAATGGTGAAATCATTTGAAGTCACGGATTTACCAG