1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTCAACTCTGATGCCTTGTTATGAAGGTACCCCATGTATCACGGACTGTGTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcctatccaatgctgttcccacattgtgttatttaatgtcttcttttggctttatctgcttcattgtctcaaatagaggttagattagtttttt...
species | Zea mays |
transcript | GRMZM2G140689_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|19770099|gb|BQ034820.1|BQ034820
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: CTGAGCTTGAAAAGCTGGGGCAGAAGTATCG-GTGGNCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAEST: gi|211091999|gb|FL476412.1|FL476412
genomic: CTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGG-CCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAA
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|19436894|gb|BM953304.1|BM953304
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|37383195|gb|CF628588.1|CF628588
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|19057702|gb|BM736369.1|BM736369
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|78083854|gb|DV512247.1|DV512247
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|19436893|gb|BM953303.1|BM953303
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|19057549|gb|BM736231.1|BM736231
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCAACTCTGATGCCTTGTTATGAAGGTACCCCATGTATCACGGACTGTGTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcctatccaatgctgttcccacattgtgttatttaatgtcttcttttggctttatctgcttcattgtctcaaatagaggttagattagtttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatagag