1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTGCCTAGAGCCGAGGAGATTACACCTGCTATAATGAACCTCCTAGAAACCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAGgtgtgcatgaatacttaataatcatttcatgagaatctacttctttagtacattgctaggtcttttgtcaggtcttttaaccaactaaagaagggcgcac...
species | Zea mays |
transcript | GRMZM2G140160_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAG GGAATCATTGAGCATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTCEST: gi|116814721|gb|EC857337.1|EC857337
genomic: CCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAGgtgtgcatga ... ttaatgccagGGAATCATTGAGTATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTC
EST: AGGCGACAGGTATCTAGAAACTGCTTTGGAAGAATCACTGCAG AEST: gi|116814721|gb|EC857337.1|EC857337
genomic: AGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAGgtgtgcatga ... ttaatgccag-
EST: AGGCGACAGGTATCTAGAAACTGCTTTGGAAGAATCACTGCAG AEST: gi|60347302|gb|DN214275.1|DN214275
genomic: AGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAGgtgtgcatga ... ttaatgccag-
EST: CCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAG GGAATCATTGAGTATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTCEST: gi|4572934|gb|AI586583.1|AI586583
genomic: CCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAGgtgtgcatga ... ttaatgccagGGAATCATTGAGTATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTC
EST: CCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAG GGAATCATTGAGTATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTCEST: gi|37416454|gb|CF645877.1|CF645877
genomic: CCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAGgtgtgcatga ... ttaatgccagGGAATCATTGAGTATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTC
EST: GCTTTGGAAGAATCACTGCAG GGAATCATTGAGTATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTC
genomic: GCTTTGGAAGAATCACTGCAGgtgtgcatga ... ttaatgccagGGAATCATTGAGTATCCACAGAGGGCACCCCCGGCTTCAAAGGAAGTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCCTAGAGCCGAGGAGATTACACCTGCTATAATGAACCTCCTAGAAACCATATCAGGCGACAGGGATCTAGAAACTGCTTTGGAAGAATCACTGCAGgtgtgcatgaatacttaataatcatttcatgagaatctacttctttagtacattgctaggtcttttgtcaggtcttttaaccaactaaagaagggcgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG