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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaattgatcttgttgcttttagatcctccaccagttctaatgtcttttacacccag

Basic information

species Zea mays
transcript GRMZM2G139977_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 11
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaag--ccttagagacaca---attgatcttgttgcttttagatcctc-------caccagttctaatgtcttttacacccag
||||||||||||| || |||||||| || |||||||||||||| || || ||||||||||||||||| |||||||| ||||| || ||| || | ||||||||||  | ||   |||||     ||  |||  |  ||||||| || ||       ||  | |||| ||||  ||||||| |||
GTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGgtaagacctttgttgacacttctgttactctgctcacttttagctcttctagtttacatgatttctgatgtactttacactcag

upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaattgatcttgttgcttttagatcctccaccagttctaatgtcttttacacccag--------------------------------------------------
| || || ||||||||||| || || ||||| |||||||| || |||||||||||||| || ||||| || || || ||||| ||||| || ||||| |||| ||| | | ||   || |  ||            | |  ||   | | || |  |  ||| ||||    |                                                  
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaatagcttcagtatatacaaaatgagaaaaaaacttgtctatttatt-ttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgtttctgcag

upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagcct-----------tagagacacaattgatctt-gttgcttttagatcctcc----acca-gttctaatgtcttttacacccag-----------------------------
| || || ||||| ||||| || || ||||| |||||||| || |||||||||||||| || ||||| || || || ||||| ||||| || ||||| |||| |||||           || ||||| |||  |     ||||  | |  ||  |||    || | ||  | | ||  ||||   | |                              
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcag

upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaat-tgatcttgttgctt---ttagatcctccaccagttcta-atgtcttttacacccag-----------------------------------------------
| ||||||||||| ||||| || || |||||||||||||| || |||||||| ||||| || ||||| || ||||| ||||||||||| ||  | || |||||||  | | ||   ||   | | | |  ||      | |  |   | |   ||| || ||||     |  | ||                                                
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacag

upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaattgatcttgtt------gctttt------agatcctccaccagttctaatgtcttttacacccag----
| ||||||||||||||||||||  |||||||||| ||||| ||| ||||||||||||| || ||||| || || || || ||||||||||| || || |||| || || |  | |     |||| || ||      | |||       | |||||  ||    || ||| |  |      | |     
GCTACATATGGGCTTGTCCACCACTGAAGGGTGAGGATTATATCCTATATTGCCATCCAGAAATTCAGAAAACACCAAAGTCTGATAAACTACGGGAATGgtcagtctaattgtctttggtgattttcttcatacagttttcgtaggaaaatcctttacatcctccaatttgctcctggtctacacag

upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaattgatcttgttgctttt--------agatcctccaccagttctaatg-tcttttacacccag----------
| || |||||||| || || ||| | |||||||||||||| || ||||||||||||||||| ||||| || || || ||  ||||||||||  | || ||||| |   || | ||     ||   |  ||| ||||        |||      |     | ||||| |   | | || |            
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaagagagaatattgcatataatgatgcataatactccttccttttcag

upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 12
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagccttagagacacaattgatcttgttgcttttagatcctccaccagttctaatgtcttttacacccag-------------------------
| ||||||||||||||||| ||  ||||||| || ||||| ||||||||||| ||||| || ||||| ||||| || |||||||||||||| || ||||||| ||  | |   ||    |||   |     |||    | | | ||    |   || ||| |||||| |                            
GCTACATATGGGCTTGTCCGCCGCTGAAGGGCGAGGATTATATCTTATATTGTCATCCAGAAATTCAGAAGACGCCAAAATCTGATAAACTACGAGAGTGgtcagt-tcatttacctttttgggatga--acttcgtaaactttcat--atgaaaaagtcatttacatcatccaactgcccacgttgttattcgcag

upper sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagcct----------------tagagacacaattgatcttgttgcttttagatcctcca--ccagttctaatgtcttttacacccag--------------------------------
| || |||||||||||||| ||||||||||||||||| || || || |||||||||||||| ||||| || || || ||||||||||||||  | || |||| ||  |                ||||      | | || ||  |  ||| |  | |   |    |||| | ||  ||     | ||                                  
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag