Sequence
atgc intronic sequence ATGC exonic sequenceGCATACTAAGATGCCTCGTGGATTTGGATTTGTTACATTTTCTGATCCATCTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatctaatttagatcgaccgtaacatgggaccttagcttccagctctgcaaacctctgcaatttagttgacagttagtttctctcgaaccctctcaacttcttgtttatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G139643_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g12850.1 (Oryza sativa), 5'ss of exon 4
GCATACTAAGATGCCTCGTGGATTTGGATTTGTTACATTTTCTGATCCATCTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatct-aatttagatcgaccgtaacatgggaccttagcttccagctctgcaaacctctgcaa--------tttagttgacagttagtttctctcgaaccctctcaacttcttgtttatgcag
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GCATACTAAGATGCCTCGTGGATTTGGATTTGTTACATTTTCCGATCCATCTGTTATAGACAAGGTTTTGGAGGATGAGCACGTTATAGATGGAAGAACGgtaggacatcttgatttagatcagccgttacgtgggacttcagtctacagttg-acactcttttgcaaagtcgcactttgggtttatcttggcttctctttatcttgcttaactt-ttatttgttcag
upper sequence: GRMZM2G139643_T05 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0002g02350.t01 (Vitis vinifera), 5'ss of exon 3
GCATACTAAGATGCCTCGTGGATTTGGATTTGTTACATTTTCTGATCCATCTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatctaatttagatcgaccgtaacatgggaccttagct-tccagctctg-caaacctctg-caatttagttgacagttagtttctctc-----gaaccctctcaacttcttgtttatg-cag
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ACATACCGGAAGGCCACGAGGCTTTGGATTTATAACATTTGCTGATCCAGCTGTGGCTGATAAGGTTTTGGAGGAAGATCATGTTATAGATGGCAGAGCAgtaagttgccaaactcagcccaat----gaatgatatttcagatgttcttctttgtctgacttttatcaacttgatgggca-ttggtttcaccctgttggagtttgttttgattcattcttgtatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30088355|gb|CB886560.1|CB886560EST: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACG GTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
genomic: CTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatc ... gtttatgcagGTTGAAGTTAAGAGGACTGTCCCGAGGGAAGAGATGATCACCAAAGACGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATACTAAGATGCCTCGTGGATTTGGATTTGTTACATTTTCTGATCCATCTGTTATAGACAAGGTTTTGGAGGATGATCACGTTATAGATGGCAGAACGgtaggatatctaatttagatcgaccgtaacatgggaccttagcttccagctctgcaaacctctgcaatttagttgacagttagtttctctcgaaccctctcaacttcttgtttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG