1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGACCAACTGCAGTGAACCTATCTGATGCTGCAACAAAGCTCCAAACTTTGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaaccttgaccccccaaaaaacattctctgctttcaattaaaaacaaaaggatacagaataattatgaataaactatgtctgtgtgaatttacatt...
species | Zea mays |
transcript | GRMZM2G139533_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211134391|gb|FL235008.1|FL235008
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGAEST: gi|211541114|gb|FL234981.1|FL234981
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGA
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTC-AAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|89250566|gb|DY622352.1|DY622352
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: GGTATCAAAAGGCAGCTGATACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGGAGGCCGCAGAGACGATGCTTTGTTGATGATGTGGCAGATAEST: gi|211134383|gb|FL235000.1|FL235000
genomic: GGTATCAAA-GGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTG-AGGCCGCAGAGACGATGCTT-GTTGATGATGTGGCAGATA
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCCGATAATEST: gi|78084278|gb|DV512671.1|DV512671
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211133443|gb|FL234988.1|FL234988
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|78116800|gb|DV535187.1|DV535187
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211133448|gb|FL234993.1|FL234993
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|37398320|gb|CF636472.1|CF636472
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: ACTGCAAAAGATCCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|88752183|gb|DY536324.1|DY536324
genomic: ACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGATACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|74244684|gb|DT652598.1|DT652598
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|71435544|gb|DR816594.1|DR816594
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211133451|gb|FL234996.1|FL234996
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211134389|gb|FL235006.1|FL235006
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCMGATAATEST: gi|78091338|gb|DV519712.1|DV519712
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211133445|gb|FL234990.1|FL234990
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|76921923|gb|DV168769.1|DV168769
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|76285911|gb|DV025479.1|DV025479
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211133440|gb|FL234985.1|FL234985
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAN GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|213191131|gb|FM184996.1|FM184996
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|88756113|gb|DY540254.1|DY540254
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAGAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|74242198|gb|DT650112.1|DT650112
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|60347352|gb|DN214325.1|DN214325
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|12046458|gb|BF728597.1|BF728597
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCTGCAGAGACGATGCTTGCTGATGATGTGGCAGATAATEST: gi|211133442|gb|FL234987.1|FL234987
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|71767215|gb|DR965152.1|DR965152
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|78180978|gb|DV551351.1|DV551351
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|74233420|gb|DT641334.1|DT641334
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211133447|gb|FL234992.1|FL234992
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTNGTTGATGATGTGGCAGATAAEST: gi|211133439|gb|FL234984.1|FL234984
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTT-GTTGATGATGTGGCAGATAA
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGAT-CCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|32855368|gb|CD995049.1|CD995049
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|88756070|gb|DY540211.1|DY540211
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|71445095|gb|DR826145.1|DR826145
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|32866511|gb|CF006193.1|CF006193
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|71427098|gb|DR808148.1|DR808148
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|32856195|gb|CD995876.1|CD995876
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCTGCAGAGACGATGCTTGTTGATGATGTGGCAGATAATEST: gi|211134392|gb|FL235009.1|FL235009
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
EST: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAG GTCTACATTGAGGCCGCAGARACGATGCTTGTTGATGATGTGGCCGATAAT
genomic: TGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaacct ... gatcgataagGTCTACATTGAGGCCGCAGAGACGATGCTTGTTGATGATGTGGCAGATAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGACCAACTGCAGTGAACCTATCTGATGCTGCAACAAAGCTCCAAACTTTGGTATCAAAGGCAGCTGAAACTGCAAAAGATTCCAAGTCTATCTTTCAGgtgctaaccttgaccccccaaaaaacattctctgctttcaattaaaaacaaaaggatacagaataattatgaataaactatgtctgtgtgaatttacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA