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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTAGAACACTTGGCACACCTAGCGAGAAGATTTGGCCTGGCTATGCTAAATTACCAGGCGTGAAAGTAAATTTTGTCAAACAACCgtaagtgtctctaccatagtactatttatacttttcttgttttactgagtgtcaattttgtctgacagttttttttgtttttattgtcag

Basic information

species Zea mays
transcript GRMZM2G139038_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139038_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 5
ATTTTTAGAACACTTGGCACACCTAGCGAGAAGATTTGGCCTGGCTATGCTAAATTACCAGGCGTGAAAGTAAATTTTGTCAAACAACCgtaagtgtctctaccatagtactatttatacttttcttgttttactgagtgtcaat-----tttgtc-tgacagttttttttgtttttattgtcag
|| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||| || || || ||||| ||||||||||||||||||||||||||||    ||| | | ||   || |  | ||| | |  |||||||| ||      ||||  ||| | || | ||  ||| | |||||||
ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACCgtaagtgtctcctggataatgc-atacctaatcgtgttggtctgatgagtgtctatatgccattgtgatgaaatttctgttcttttatcttgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025976|gb|CO454725.1|CO454725
EST:     CCTGGCTATGCTAAATTACCAGGCGTGAAAGTAAATTTTGTCAAACAACC                         GTATAATAGGCTAAGGGATAAGTTCCCAGCTGCATCTTTTTCTGGGCGACC
genomic: CCTGGCTATGCTAAATTACCAGGCGTGAAAGTAAATTTTGTCAAACAACCgtaagtgtct ... ttattgtcagGTATAATAGGCTAAGGGATAAGTTCCCAGCTGCATCTTTTTCTGGGCGACC
EST: gi|13388885|gb|BG462452.1|BG462452
EST:     CCTGGCTATGCTAAATTACCAGGCGTGAAAGTAAATTTTGTCAAACAACC                         GTATAATAGGCTAAGGGATAAGTTCCCAGCTGCATCTTTTTCTGGGCGACC
genomic: CCTGGCTATGCTAAATTACCAGGCGTGAAAGTAAATTTTGTCAAACAACCgtaagtgtct ... ttattgtcagGTATAATAGGCTAAGGGATAAGTTCCCAGCTGCATCTTTTTCTGGGCGACC