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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacccacctttctgttttctgtactgttctatgcctaattgatagtgaaaagcacataaccatttcatcattaactctttag

Basic information

species Zea mays
transcript GRMZM2G138676_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 4
TCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacccacctttctgttttctgtactgttctatgcctaattgatagtgaaaagcacataaccatttcatcattaactctttag
|||||||| || || ||||| |||||||| ||||||||||||||||||||||| |||||||||| |      | |||   || |    | |  ||||||      |||  |||||| ||| ||||||  ||| |  | |||||||   
TCTGTCACTTATATTGCTGAGCATGTGGTCGGAACTGGTTCTTTTGGGGTTGTATATCAGgtaagcctgtggctttttcattgtaaaaatttctctatg------tgactgtgaaaggcaaataacctgttcgt-gtcaactcttag-

upper sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 3
TCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacccacctttctgttttctgtactgttctatgcctaa-ttgatagtgaaaagcacataaccatttcatcattaactctttag-----
 |||| |  ||||| || ||||||||||||||||||||||||||||| ||||| |  || |||| ||   |  ||||   |||||| |    ||   |  ||||     | |     |    | |   |  |  |  ||||||  || |     
ACTGTTAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAgtaagcagaacttctttggtttttcttttgaatttactttctaaaccttttgcagttattttacagtgagatagtttttaactgctttgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71312508|gb|DR792787.1|DR792787
EST:     ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAG                         GCAAAATGCCGAGAAACAGGGGAAATTGTTGCCATAAAAAAGGTCCTTCAA
genomic: ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacc ... aactctttagGCAAAATGCCGAGAAACAGGGGAAATTGTTGCCATAAAAAAGGTCCTTCAA
EST: gi|89764128|gb|DY691048.1|DY691048
EST:     ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAG                         GCAAAATGCCGAGAAACAGGGGAAATTGT
genomic: ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacc ... aactctttagGCAAAATGCCGAGAAACAGGGGAAATTGT
EST: gi|91050634|gb|EB161052.1|EB161052
EST:     ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGGTGTGTATCAG                         GCAAAATGCCGAGAAACAGGGGAAATTGTTGCCATAAAAA
genomic: ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacc ... aactctttagGCAAAATGCCGAGAAACAGGGGAAATTGTTGCCATAAAAA
EST: gi|6095487|gb|AW120154.1|AW120154
EST:     ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAG                         GCAAAATGCCGAGAAACAGGGGAAATTGTTGCCATAAAAAAGGTTCTTCAA
genomic: ACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacc ... aactctttagGCAAAATGCCGAGAAACAGGGGAAATTGTTGCCATAAAAAAGGTCCTTCAA