1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaactacaccattactatatatcacatacagtaacagataatgccatctaaattttgagggtcccaataattatgccaacttgaacaaaccctttgatccgttctttcactcacgcaacaatgaaagcag
species | Zea mays |
transcript | GRMZM2G138349_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCCEST: gi|78179014|gb|DV549387.1|DV549387
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCCEST: gi|50334442|gb|CO529568.1|CO529568
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCCEST: gi|12046228|gb|BF728367.1|BF728367
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCCEST: gi|6918414|gb|AW399944.1|AW399944
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCCEST: gi|78087463|gb|DV515856.1|DV515856
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCCEST: gi|32863297|gb|CF002979.1|CF002979
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCCEST: gi|211472768|gb|FL447978.1|FL447978
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
EST: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTG CAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
genomic: ATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaact ... atgaaagcagCAAGTGTTCGATCATGACATGGTGTCCAAGGACGACCTCATGGGTGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAAGAACTGAAGCTCTCTGTTCCCCAGCAATATGGACCTCTGAAGCTGgtaatgaactacaccattactatatatcacatacagtaacagataatgccatctaaattttgagggtcccaataattatgccaacttgaacaaaccctttgatccgttctttcactcacgcaacaatgaaagcag
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG