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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccaccctgtcatgcttgactggtcctcttgtgatatgttcatgttaatagcatgatgtcttttgttctattggaaaataaaaagtctccctgga...

Basic information

species Zea mays
transcript GRMZM2G137930_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 3
GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccaccctgtcatgcttgactggtcctcttgtgatatgttcatgttaatagcatgatgtcttttgttctattggaaaataaaa-agtctccctgga
| |||||||| ||||| ||||||||||||||||||||||| |  ||   |    |     | || |   |  || |  || ||| |||| | |  || |     |  |  ||||  | || |    || |
GACCTGGTGCACCAACTATATTCAACTGCgtaaggccaccataacagattcacatttgttttttctcccagatttagtttgata-catgttcttattggaaacttatgtcaatagcatagcccttttgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9742923|gb|BE519071.1|BE519071
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|91878963|gb|EB408920.1|EB408920
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|91870587|gb|EB400969.1|EB400969
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|9794549|gb|BE552857.1|BE552857
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|89252994|gb|DY624780.1|DY624780
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|23357487|gb|BU645136.1|BU645136
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGNTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|211153963|gb|FL101500.1|FL101500
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|78109928|gb|DV528343.1|DV528343
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|60400269|gb|DN233076.1|DN233076
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|22521401|gb|BU080212.1|BU080212
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|21432147|gb|BQ547637.1|BQ547637
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|6973370|gb|AW438064.1|AW438064
EST:     AGGTCCTGGTGCTCCAACCATATT-AACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: AGGTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|60396637|gb|DN229505.1|DN229505
EST:     CAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: CAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|71441944|gb|DR822994.1|DR822994
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|76923128|gb|DV169344.1|DV169344
EST:     CCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: CCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|22546627|gb|BU098938.1|BU098938
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|86471929|gb|DY238299.1|DY238299
EST:     GCCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAGGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|60397937|gb|DN230753.1|DN230753
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|23357695|gb|BU645344.1|BU645344
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|71445656|gb|DR826706.1|DR826706
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|91870563|gb|EB400947.1|EB400947
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|211043567|gb|FL332011.1|FL332011
EST:     AGGTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: AGGTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|74035433|gb|DT535921.1|DT535921
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|76287732|gb|DV027300.1|DV027300
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|20301303|gb|BQ164246.1|BQ164246
EST:     TGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: TGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|22472706|gb|BU037186.1|BU037186
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|31557952|gb|CD527164.1|CD527164
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|22133615|gb|BQ833806.1|BQ833806
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
EST: gi|71444627|gb|DR825677.1|DR825677
EST:     GTCCTGGTGCTCCAACCATATTCAACTGC                         GTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA
genomic: GTCCTGGTGCTCCAACCATATTCAACTGCgtaaggccac ... cctatgccagGTCATTGAGATACCAAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAA