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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGAGCTTCCAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttctctcttgaggcttgaagaccatcttaaccttttgaactttacatgtaggtggagaagactgagatcttatttattttttcag

Basic information

species Zea mays
transcript GRMZM2G137528_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 4
GTCATTGAGCTTCCAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttctctcttgaggcttgaagaccatcttaacct-tttgaactttacatgtaggtggagaagactgagatcttatttattttttcag
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||    |   |||| |      || | |||||||| |  |   |  ||||  | |  |  || || | | |       | | |||||||||
GTCATTGAACTTCCTATCAAACATCCAGAGCTATTTGAGAGTCTTGGAATTGCCCAACCAAAGgtttgaact---tcttaac-----aatatcatcttaaacgatcctatttttaagtattagcagaaaatattaac------tctcttttttcag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 4
GTCATTGAGCTTCCAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttctctcttgaggcttgaagaccatcttaaccttttgaactttacatgtaggtggagaagactgagatcttatttattttttcag-----------
||||||||||| |||||||||||||| || || ||||| || ||||||||||| |||||||||||   || ||  | | | |  |||   |   |  | |     | | |   |||  | | ||   |    |  |   ||  | | | | |              
GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAGgtagtttctcattttggggtgttgctaaattttgtcattccatcagcagcacacttggttgtttatttttctg--tttgctgagtctcttgaacacatcacag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G24000.1 (Glycine max), 5'ss of exon 4
GTCATTGAGCTTCCAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttctctcttgaggcttgaagaccatcttaaccttttgaactttacatgtaggtggagaagactgagatcttatttattttttcag-----------
||||||||| | |||||||||||||| || || ||||| || ||||||||||| |||||||||||  | | |||   ||  || |||  |   |  ||   | ||  | |   |||  | | ||  ||    |  |   ||  | | | | |              
GTCATTGAGTTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAGgt--agtgtctgattttggggttgttgctaaattttgtcattccatcagcacacttggttgttgatttttctg--tttgctgaatctcttgatcacatcacag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCATTGAGCTTCCAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttctctcttgaggcttgaagaccatcttaaccttttgaactttacatgtaggtggagaagactgagatcttatttattttttcag
||||||||||| |||||||| ||||| ||| | ||||||   ||||||||||| || ||||||||  | ||    |||| |  |||      | |||  |  || |||   |   | || | |       | |   ||||  | | | |||  ||
GTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAGgtacacttgaa-tcttaaacctt------cttctccatattgtgatgatgctaagtggattagacgtaatctcatctc-tctgtctttctag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 5'ss of exon 4
GTCATTGAGCTTCCAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttctctcttgaggcttgaagaccatcttaaccttttgaactttacatgtaggtggagaagactgagatcttatttattttttcag
||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||||||   ||||   | | |    |||  |   | |||||   |   ||  ||  ||  |  ||    |   |||  ||||  | |         
GTCATTGAGCTTCCAATTAAACACCCTGAACTGTTTGAGAGTCTTGGAATAGCTCAACCAAAGgta-gttttagttgtagtattttgctgg--agcttaagtatcataagcttttattaatttg----attttgatttctttataacag------

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 4
GTCATTGAGCTTCCAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgt--ttattttctctcttgaggcttgaagaccatcttaacc---ttttgaac--tttacatgtaggtggagaag-actgagatcttatttattttttcag
|| ||||||||||||||||| ||||| ||| ||||||| || ||||| || || |||||||||||  ||  ||| | | | |   | | | |   ||||||  |   | | |||    |||||  | | |   |||  |     |||  |  |  ||||   |
GTTATTGAGCTTCCAATCAAGCATCCTGAATTATTTGAAAGTCTTGGTATAGCTCAACCAAAGgtacttcctttatttgtagttacatcatgtgtatcttattcatgtctcgaaggacttacaccttgtttttgaaatagcccaatcaaagatgcttttattg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32941875|gb|CF046694.1|CF046694
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|6989624|gb|AW447837.1|AW447837
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCACAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|19350715|gb|BM895247.1|BM895247
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|211070411|gb|FL012986.1|FL012986
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|67024358|gb|CO453107.1|CO453107
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|19350732|gb|BM895264.1|BM895264
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|60395128|gb|DN227997.1|DN227997
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|60352642|gb|DN219615.1|DN219615
EST:     ATTGCCC-ACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: ATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|32866277|gb|CF005959.1|CF005959
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
EST: gi|32933070|gb|CF037882.1|CF037882
EST:     CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAG                         GGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT
genomic: CAATCAAACATCCGGAACTATTTGAGAGCCTTGGAATTGCCCAACCAAAGgtttattttc ... attttttcagGGTGTCCTCCTTTATGGACCTCCAGGCACAGGAAAGACATTGCTGGCACGT