1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTTATTACATCAATGACAGAGCATTTTTGTGCTGGCTGCAATAGATTACGGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgtactgctatggcattgattcatgtttctgattttctttctcatgtaatttgctaacgtgttacactttctgggctcattaatataaaagtat...
species | Zea mays |
transcript | GRMZM2G135816_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGACCCCATCCGTTCTGGTGTTGATGACGCTGGACTGAAGEST: gi|6020607|gb|AW065640.1|AW065640
genomic: TCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|6194756|gb|AW146860.1|AW146860
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|78090417|gb|DV518791.1|DV518791
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|149048405|gb|EE048313.2|EE048313
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|91054281|gb|EB164699.1|EB164699
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|16378519|gb|BI992468.1|BI992468
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAANCCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|13249841|gb|BG360746.1|BG360746
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: TGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|91874219|gb|EB404176.1|EB404176
genomic: TGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGGTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|32859387|gb|CD999068.1|CD999068
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|148946521|gb|EC891833.2|EC891833
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAGEST: gi|148928476|gb|EE285290.2|EE285290
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
EST: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAG GTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
genomic: GGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgta ... atttgtacagGTAAGTTTGAGAGAACCCATCCGTACTGGTGTTGATGACGCTGGACTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTATTACATCAATGACAGAGCATTTTTGTGCTGGCTGCAATAGATTACGGTTATTGGCTGATGGAAACCTCAAGGTGTGCTTATTTGGCCCCTCAGAGgtatgccgtactgctatggcattgattcatgtttctgattttctttctcatgtaatttgctaacgtgttacactttctgggctcattaatataaaagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA