1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcattcatgtttgtaggaacaaagtttcttaatgattgataatgcaattactcttggtcttttatttggcttc...
species | Zea mays |
transcript | GRMZM2G135727_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCANAAGAAGGCTCACCTGATGGAGATTEST: gi|67024182|gb|CO452931.1|CO452931
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATTEST: gi|211286419|gb|FL307760.1|FL307760
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
EST: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAG ATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
genomic: AGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagct ... tttcttttagATTAGGAAGATGAAGGGTTTGAAGCAGAAGAAGGCTCACCTGATGGAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCAAATATGAAAATGATGCTGGCAAGAAGGAAATTCAGCTGCAGCTTGAGAAGATGAAGAAATATGCTTCTGTTATCCGTGTCATTGCTCATACCCAGgtaagaagcttaattgtgctttgttgctcattcatgtttgtaggaacaaagtttcttaatgattgataatgcaattactcttggtcttttatttggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA