1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGAACTTTATCTAGTGGAGTTGAAATCGCAGTGGCCTCAAGCTTGGTAACATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAGgtatcgtacagttatcttcagtctgctagatacacaactttcttaattttaattgatgaaaatgataattgtttcag
species | Zea mays |
transcript | GRMZM2G135359_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAG ATAACAAACTTGTCCAAAGTAAGTCACAAEST: gi|211161244|gb|FL160685.1|FL160685
genomic: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAGgtatcgtaca ... attgtttcagATAACAAACTTGTCCAAAGTAAGTCACAA
EST: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCACAGTACAGGAAAAAG ATCACAAACTTGTCCAAAGTGAGTCACAAGAATTTTATGAACTTGCTTGGCEST: gi|76012816|gb|DT939986.1|DT939986
genomic: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAGgtatcgtaca ... attgtttcagATAACAAACTTGTCCAAAGTAAGTCACAAGAATTTTATGAACTTGCTTGGC
EST: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAG ATAACAAACTTGTCCAAAGTAAGTCACAAGAATTTTATGAACTTGCTTGGCEST: gi|211162831|gb|FL160688.1|FL160688
genomic: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAGgtatcgtaca ... attgtttcagATAACAAACTTGTCCAAAGTAAGTCACAAGAATTTTATGAACTTGCTTGGC
EST: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCACAGTACAGGAAAAAG ATCACAAACTTGTCCAAAGTGAGTCACAAGAATTTTATGAACTTGCTTGGC
genomic: CATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAGgtatcgtaca ... attgtttcagATAACAAACTTGTCCAAAGTAAGTCACAAGAATTTTATGAACTTGCTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAACTTTATCTAGTGGAGTTGAAATCGCAGTGGCCTCAAGCTTGGTAACATCTGCAAAGGATTGGTCGAAAGAAAATGAATCGCAGTACAGGAAAAAGgtatcgtacagttatcttcagtctgctagatacacaactttcttaattttaattgatgaaaatgataattgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA