1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctgaattggggtttttattctgtgtgttcttggtcgcag
species | Zea mays |
transcript | GRMZM2G135283_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|148946029|gb|EC891328.2|EC891328
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211286141|gb|FL173722.1|FL173722
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGGCTTEST: gi|211379736|gb|FL173736.1|FL173736
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGG-CTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATYGATATGGCAGAGTCCTTGTGTCAGAAACGTACTTTGGAGGCEST: gi|211379741|gb|FL173741.1|FL173741
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGC
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GYTTATYGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGEST: gi|21987802|gb|BQ779330.1|BQ779330
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGG
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211284346|gb|FL173719.1|FL173719
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTCGAGGCTTTEST: gi|149078907|gb|EE167727.2|EE167727
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211382375|gb|FL173752.1|FL173752
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACC-TGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGEST: gi|211379738|gb|FL173738.1|FL173738
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAG
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATKGATATGGCARAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211379739|gb|FL173739.1|FL173739
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGNGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTT-ATTGATATGGCAGAEST: gi|211379748|gb|FL173748.1|FL173748
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGA
EST: ACAAGTACAGCTGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAATCCTTGTGTEST: gi|149012532|gb|EE042603.2|EE042603
genomic: ACAAGTACAGC-GAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211379749|gb|FL173749.1|FL173749
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAWATGA GTTTAT-GATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211286154|gb|FL173735.1|FL173735
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTT-ATTGATATGGCAGAGTCCTTGEST: gi|211379747|gb|FL173747.1|FL173747
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTG
EST: ACAAGTACAGCGAGGGGTACC-TGGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGEST: gi|211379746|gb|FL173746.1|FL173746
genomic: ACAAGTACAGCGAGGGGTACCCTGG-CGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTG
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGEST: gi|211286148|gb|FL173729.1|FL173729
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTG
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|148969981|gb|EE020895.2|EE020895
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|71299012|gb|DR785498.1|DR785498
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211379743|gb|FL173743.1|FL173743
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGEST: gi|211286151|gb|FL173732.1|FL173732
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGG
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGGATATGGCAGAGTEST: gi|211284347|gb|FL173720.1|FL173720
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTG-ATATGGCAGAGT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211286145|gb|FL173726.1|FL173726
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACC-TGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGGAGGCTTEST: gi|148947246|gb|EC892606.2|EC892606
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGG-AGGCTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211382374|gb|FL173751.1|FL173751
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAEST: gi|149081312|gb|EE170425.2|EE170425
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGA
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211379744|gb|FL173744.1|FL173744
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTCGAGGCTTTEST: gi|148945831|gb|EC891120.2|EC891120
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|148973319|gb|EE024404.2|EE024404
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211379737|gb|FL173737.1|FL173737
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACC-TGGCGCAAGATACTACGGGGGAAATGA GTYTAT-GATATGGCAGAGTCCTTGTGTCEST: gi|149089957|gb|EE179246.2|EE179246
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTC
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTTEST: gi|211286140|gb|FL173721.1|FL173721
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGGCTTT
EST: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGA GTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGG
genomic: AACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccct ... ttggtcgcagGTTTATTGATATGGCAGAGTCCTTGTGTCAGAAACGTGCTTTGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTTCACGTCGGTGTCAGTGATGCAGGCAGTGGGTTCCGTCATGACCAACAAGTACAGCGAGGGGTACCCTGGCGCAAGATACTACGGGGGAAATGAgtactgccctgctctatcggttgtcattctcgtgattgtttcagtggaaacacgcgtgcaaattgagtgactgtctgggtgaataatctgaattggggtttttattctgtgtgttcttggtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA