Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAGAAAGGGATACAAGACTGGTGTATCACATGCAATCAGTTCAAAATTATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAGgtacctctttcagtgttatcattaatcttatgcagattcggttatccatatgctttcttcaaggacaagatttttcctgtgatcatttatgatctatgtc...

Basic information

species Zea mays
transcript GRMZM2G135256_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135256_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g09360.1 (Oryza sativa), 5'ss of exon 4
ATGGAGAAAGGGATACAAGACTGGTGTATCACATGCAATCAGTTCAAAATTATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAGgtacctctttcagtgttatcattaatcttatgcagattcggttatccatatgc---tttcttcaaggacaagatttttcctgtgatcatttatga-tctatgtc
||||||||| ||||||||||| ||  ||||||   | | |||| ||||| | || ||||| ||||||||||||||| | || ||||| ||||||||||||||| || ||    || ||  || ||| ||      |   |   |  | |||||   | |  ||| |  || |  | |     |   ||| ||||| | | ||| 
ATGGAGAAATGGATACAAGACAGGGTTATCACGCACCAGCAGTGCAAAACTCTCAAATGTTGTTGTTGTCTCTGTAGCTGGAGGCATCCATGATTATCAGgtatcttttctgttgata--ataaattttcatttcacatgacaaatcctatgcagatctggtcatgtgcatg-ctctgaaaatttgcatctatgactgtttgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8103033|gb|AW927699.1|AW927699
EST:     TATCTAATGTAGTTG-TGTCTCTGTATCAGGTGGCATTCATGATTATCAG                         ATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
genomic: TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAGgtacctcttt ... ttttattcagATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
EST: gi|87151766|gb|DY396555.1|DY396555
EST:     TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAG                         ATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
genomic: TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAGgtacctcttt ... ttttattcagATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
EST: gi|22490449|gb|BU050372.1|BU050372
EST:     TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAG                         ATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
genomic: TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAGgtacctcttt ... ttttattcagATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
EST: gi|19058179|gb|BM736846.1|BM736846
EST:     TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAG                         ATTAGGTCAAGGGTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
genomic: TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAGgtacctcttt ... ttttattcagATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
EST: gi|19058458|gb|BM737125.1|BM737125
EST:     TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAG                         ATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC
genomic: TATCTAATGTAGTTGTTGTCTCTGTATCAGGTGGCATTCATGATTATCAGgtacctcttt ... ttttattcagATTAGGTCAAGGTTGGCATCATTGGATGGAATTGTGCCTTCTACTCACGGC