ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag

Basic information

species	Zea mays
transcript	GRMZM2G134917_T01
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G10150.2 (Glycine max), 5'ss of exon 4

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag
 || || ||||||||||||||||| || ||||||||  |||| || || || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||   ||||        ||  ||||   | | |  ||     || | |||  |||      | | |  |    |  | ||| |   |  || || |  | |||||
AGAGAAGGTTGTGCAGGAGAAGAAAGTCCTTGAAGTTATTGTAGAAAAGGGGATGCAGAATGGGCAGAAGATAACATTCCCTGGCGAAGCTGATGAAGCGgtatg--ttgata-------tgagaatcagtattgtaatttgc-attgt-gcttcatggattgcagaaattt---ataatgaccca-tgagttgttggtattttgcag

upper sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G38790.1 (Glycine max), 5'ss of exon 4

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag
 || || ||||| ||||||||||| || ||||||||  |||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||    | ||   | ||  |  |  ||  |   | ||       | |  | | || ||    ||    |||  |   |                           
AGAGAAGGTTGTTCAGGAGAAGAAAGTACTTGAAGTTGTTGTGGAGAAGGGAATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGgtatgttgagctttgatgctgac--actgt--accagattatggaaaactattttttgagc----tattttttgttttgcag--------------------------

upper sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G17930.1 (Glycine max), 5'ss of exon 4

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag
 || || |||||||||||||| || || ||||||||  ||||||| || || |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||  |||||        ||  ||| || |  |   || | |  | |  |   |||   ||   |||  ||   |  | | ||   |   | ||  ||   |||||
AGAAAAGGTTGTGCAGGAGAAAAAAGTCCTTGAAGTTATTGTGGAAAAGGGAATGCAGAACGGGCAGAAGATTACATTCCCTGGCGAAGCTGATGAAGCGgtatg--ctgata-------tgagaattgtaatgtcatttgcattgtgtctc---atggatca--cagaattt--ataatgatctgagttgtttgtattt---tgcag

upper sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G31620.2 (Glycine max), 5'ss of exon 4

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag
 || |||||||| ||||||||||| || ||||||||  |||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||       |    | |||  |     |||    || |    |||| |  ||       |    |||||||    ||    | | | |   |             
AGAGAAAGTTGTTCAGGAGAAGAAAGTACTTGAAGTTGTTGTGGAGAAGGGAATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCAgtatg-------ttgagctttgata----ccaacaccgtgctggattatggaaat------taggctgaccttga--tctttttttgttttgcag-------------

upper sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0080g01230.t01 (Vitis vinifera), 5'ss of exon 4

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag
||| || ||||| |||||||||||||| || |||||  ||||||| || |||||||| ||||| |||||  | ||||| ||||| ||||||||||||||||||||   ||||    || |     |   || ||  | |   |  || ||| |   | |  |   | |   ||||||| |     ||                     
TGAGAAGGTTGTTCAGGAGAAGAAGGTGCTGGAAGTCATTGTGGAAAAGGGCATGCAAAATGGACAGAAAGTTACATTTCCTGGAGAAGCTGATGAAGCGgtatgttttgatga-atcttataatactatctata-gatagatatttgttgatgattttatctgcttg-ttttgggtcattttgcag---------------------

upper sequence: GRMZM2G134917_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0073g00560.t01 (Vitis vinifera), 5'ss of exon 5

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatg---aactgattctgtccttgccaatcgtcaatttggttccttgttattg--ctatatgtgccaaatagaccttgggtccta---acctagctatctggtgattgtgtgcag----------------------------
||| || ||||| || |||||||| ||  | |||||  |||| ||||| || ||||| ||||| |||| ||| ||||||||||| |||||||||||||||||  |   || ||  |   ||  |     |  ||||| || ||| |  ||  |   | |    |     |||    ||||   |||   || ||    ||  ||| |  | |  |                             
TGAGAAGGTTGTACAAGAGAAGAAAGTGTTGGAAGTCATTGTAGAGAAGGGGATGCAAAATGGACAGAGGATAACATTCCCTGGAGAAGCTGATGAAGCGgtgagtcaaagtgtctaattctatatttgttatcaatctgtttcttcattgataaacaaagcatcttgcatactttttggtgtctataaacatattcctcatgtgttgttattgatttgtgagtatgctttgagctccttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|22819699|gb|BU499789.1|BU499789

EST:     GCATGCAAAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32920892|gb|CF025704.1|CF025704

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32841430|gb|CD981111.1|CD981111

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|67011279|gb|CO440028.1|CO440028

EST:     TGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT
genomic: TGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|149102006|gb|EE287501.2|EE287501

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTGTT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTT

EST: gi|32841622|gb|CD981303.1|CD981303

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|149075198|gb|EE163697.2|EE163697

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|91873346|gb|EB403303.1|EB403303

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTG
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTG

EST: gi|32841638|gb|CD981319.1|CD981319

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32841171|gb|CD980852.1|CD980852

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32849751|gb|CD989432.1|CD989432

EST:     GCATGCAGAATGGGCAGAGGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32921796|gb|CF026608.1|CF026608

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32840718|gb|CD980399.1|CD980399

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32841619|gb|CD981300.1|CD981300

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|149075197|gb|EE163696.2|EE163696

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32841080|gb|CD980761.1|CD980761

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|67021035|gb|CO449784.1|CO449784

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAAGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|21432300|gb|BQ547790.1|BQ547790

EST:     GCATGCAAAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32841292|gb|CD980973.1|CD980973

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32848839|gb|CD988520.1|CD988520

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32921536|gb|CF026348.1|CF026348

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|409631|gb|T12693.1|T12693

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32841278|gb|CD980959.1|CD980959

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32841040|gb|CD980721.1|CD980721

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|32920834|gb|CF025646.1|CF025646

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

EST: gi|12968015|gb|BG264962.1|BG264962

EST:     GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCG                         CCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT
genomic: GCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 505

TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactg ... ttgtgtgcagCCTGACACTGTCACTGGAGATATCATTTTTGTTCTCCAGCAGAAGGAGCATCCCAAGTTCAAGAGAAAGGGCGATGACCTCTTCTACGAGCACACCCTGA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 330

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 275

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 904

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATAAAGTTGTGCAGGAGAAGAAGGTTCTTGAAGTGTTTGTGGAGAAAGGCATGCAGAATGGGCAGAAGATCACATTCCCTGGTGAAGCTGATGAAGCGgtatgaactgattctgtccttgccaatcgtcaatttggttccttgttattgctatatgtgccaaatagaccttgggtcctaacctagctatctggtgattgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC