1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgagcactgttcatcatcccattgtgatacattccatgcttgccagcggcggtcaccaccctctgtttgcacttgttatctgcag
species | Zea mays |
transcript | GRMZM2G134176_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|19822046|gb|BQ048070.1|BQ048070
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTTGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|76288098|gb|DV027666.1|DV027666
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|78078206|gb|DV506621.1|DV506621
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|15427145|gb|BI542967.1|BI542967
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|148935183|gb|EC879220.2|EC879220
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGAATCAGGTGAGAAGTGCEST: gi|60348326|gb|DN215299.1|DN215299
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGA-TCAGGTGAGAAGTGC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|31348575|gb|CD432932.1|CD432932
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTTGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|50336275|gb|CO531401.1|CO531401
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|211011839|gb|FL066265.1|FL066265
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: CTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAAGAGAAG -TGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAEST: gi|60350390|gb|DN217363.1|DN217363
genomic: CTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAA-GAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGA
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|74243460|gb|DT651374.1|DT651374
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGGTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|16926434|gb|BM079502.1|BM079502
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|211181395|gb|FL226956.1|FL226956
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: CTGGACAGAGGCCTTTGCGAAGAGTGCATCAACGGGCATGGAAGAAGA-G GTGCAAAAGCTGGTTGAGATGGGCTTCCCAGAGGATCCGGTGEST: gi|71333057|gb|DR803563.1|DR803563
genomic: CTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGA-GAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTG
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|5917536|gb|AW054339.1|AW054339
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTTGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|211183797|gb|FL226969.1|FL226969
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGGAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAAGATCAGGTGAGGAGTGCCEST: gi|32845412|gb|CD985093.1|CD985093
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|19822034|gb|BQ048058.1|BQ048058
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTTGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGEST: gi|71311064|gb|DR791846.1|DR791846
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGG
EST: TTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|78104812|gb|DV523230.1|DV523230
genomic: TTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|76917766|gb|DV166996.1|DV166996
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|71305839|gb|DR789045.1|DR789045
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|15499307|gb|BI595820.1|BI595820
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|71333059|gb|DR803564.1|DR803564
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|148950957|gb|EC896595.2|EC896595
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|60338191|gb|DN205164.1|DN205164
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|76917765|gb|DV166995.1|DV166995
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|50336276|gb|CO531402.1|CO531402
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|29544832|gb|CB605440.1|CB605440
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|60394349|gb|DN227219.1|DN227219
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|32165058|gb|CD670376.1|CD670376
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|29576715|gb|CB616827.1|CB616827
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|71761684|gb|DR959621.1|DR959621
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|67021220|gb|CO449969.1|CO449969
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCANAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|4681176|gb|AI629846.1|AI629846
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCCEST: gi|78104811|gb|DV523229.1|DV523229
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
EST: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
genomic: ACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgag ... ttatctgcagGTGCAGAAGCTGGTTGAGATGGGCTTCCCAGAGGATCAGGTGAGAAGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTGCGTGACTATCCAACATTTGCCGCTACGGCTCGCTACTGGACAGAGGCCTTCGCGAAGAGTGCATCAACGGGCATGGAAGAGAAGgtattgcgagcactgttcatcatcccattgtgatacattccatgcttgccagcggcggtcaccaccctctgtttgcacttgttatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA