Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAGGGCACATTTCACACAGCCAGAAGgtaacttacacagcttaactgatgtttgtttcacattcaatgcaactatgagtgccaacaacccgacaggaaaccttgtaatgcatgtacattagaggcccttaagtgtctgggttacaatttaattctgtctagattccttatccagcatatttatattgccagcggaactgattttaatacatcttatgacag

Basic information

species Zea mays
transcript GRMZM2G133959_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445213|gb|DR826263.1|DR826263
EST:     CAATAGGGCACATTTCACACAGCCAGAAG                         GATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG
genomic: CAATAGGGCACATTTCACACAGCCAGAAGgtaacttaca ... cttatgacagGATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG
EST: gi|148930291|gb|EC872790.2|EC872790
EST:     CAATAGGGCACATTTCACACAGCCAGAAG                         GATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG
genomic: CAATAGGGCACATTTCACACAGCCAGAAGgtaacttaca ... cttatgacagGATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG
EST: gi|148931157|gb|EC873861.2|EC873861
EST:     CAATAGGGCACATTTCACACAGCCAGAAA                         GATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG
genomic: CAATAGGGCACATTTCACACAGCCAGAAGgtaacttaca ... cttatgacagGATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAG