1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCTATGTATACAACTCTACGGCGCACGACAGTTGTGTTTACAATGACAATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatatggatatttgttctttttctgtatctcaagaatgaatagtttgcggtagttagctagcgtaagtttcatttcattcaatgcatttctgccc...
species | Zea mays |
transcript | GRMZM2G133226_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTCEST: gi|148947034|gb|EC892331.2|EC892331
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTCEST: gi|91054599|gb|EB165017.1|EB165017
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTC
EST: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTCEST: gi|91054598|gb|EB165016.1|EB165016
genomic: ATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTC
EST: TGGAGTATTTCTTGCCAAAGCAGAAGCACACCCCCACCTATAATAGGCAG TGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTC
genomic: TGGAGTATTTCCTGGCAAAGCAGAAGCACA-CCCCACCTATAATAGGCAGgtaaatatat ... gttttatcagTGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTATGTATACAACTCTACGGCGCACGACAGTTGTGTTTACAATGACAATGGAGTATTTCCTGGCAAAGCAGAAGCACACCCCACCTATAATAGGCAGgtaaatatatggatatttgttctttttctgtatctcaagaatgaatagtttgcggtagttagctagcgtaagtttcatttcattcaatgcatttctgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC