1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACCGTTACTACCTGACCCTTTGCTACCAGATCCACCATCACGGGCTATGCCTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAGgtatgtgcttttctactcatgtctttgtgcttgcagaggcaaatgaaagatttttaactgaaaaacagctagttttttaaccatgtgcagatgtttcagt...
species | Zea mays |
transcript | GRMZM2G132796_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTACCTTTGCCGAAACAGACGCCTCAGAAG TACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGGEST: gi|67022988|gb|CO451737.1|CO451737
genomic: TTACCATTGCCGAAACAGACGCCTCAGAAGgtatgtgctt ... ttgatttcagTACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
EST: GACGCCTTAGAAG T-CAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGGEST: gi|84977444|gb|DW475866.1|DW475866
genomic: GACGCCTCAGAAGgtatgtgctt ... ttgatttcagTACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
EST: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAG TACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGGEST: gi|30032201|gb|CB834052.1|CB834052
genomic: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAGgtatgtgctt ... ttgatttcagTACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
EST: GAAACAGACGCCTCAGAAG TACAATGGATCTGGTTCACGCAACCNCCACAACTTTAGGGGCCGTGGAAGGEST: gi|78114073|gb|DV532462.1|DV532462
genomic: GAAACAGACGCCTCAGAAGgtatgtgctt ... ttgatttcagTACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
EST: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAG TACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGGEST: gi|78089842|gb|DV518216.1|DV518216
genomic: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAGgtatgtgctt ... ttgatttcagTACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
EST: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAG TACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGGEST: gi|148948574|gb|EC894100.2|EC894100
genomic: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAGgtatgtgctt ... ttgatttcagTACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
EST: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAG TACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
genomic: CTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAGgtatgtgctt ... ttgatttcagTACAATGGATCTGGTTCACGCAACCACCACAACTTTAGGGGCCGTGGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGTTACTACCTGACCCTTTGCTACCAGATCCACCATCACGGGCTATGCCTGAAATTAAGGAGCCTATATTACCATTGCCGAAACAGACGCCTCAGAAGgtatgtgcttttctactcatgtctttgtgcttgcagaggcaaatgaaagatttttaactgaaaaacagctagttttttaaccatgtgcagatgtttcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaca