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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATCATTATATATTGTCACGTCGACTGATCTTTTCTCCGATTGTGTCAAGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGGgtactgaatcatttattatgatacatcaacatttcttttaatctttatatgatgtacttgcgttttatctttgagttaaacatagttgtgtcctggatgtattgcttgacag

Basic information

species Zea mays
transcript GRMZM2G132084_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132084_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 4
TGTATCATTATATATTGTCACGTCGACTGATCTTTTCTCCGATTGTGTCAAGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGGgtactgaat--catttattatgatacatcaacatttcttttaatctttatatgatgtacttgcgttttatctttgagttaaacatagttgtgtcctggatgtattgcttgacag
| ||||||||||| |||||| ||| || ||||||||||| ||| |  | ||||||||||| |||||||| ||||| || || ||||||| |||||| ||||||||||||  |||| |||||  ||||   |  ||| | ||     || |||| || | |||  ||  ||  || |  | | |||| ||||||||||| |||||    ||||||
TATATCATTATATCTTGTCATGTCTACAGATCTTTTCTCTGATCGCCTTAAGGGGCCTATCACATTCCGCAATTCAATCATCTCCACTTTTGCATTAGGGgtactgaataacattcattatc-tacagtgaactttttctt-----ttttatgctggaattgttttaaattgtttaactga-catatttgtgtcctggctgtatg--ctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101387192|gb|EB815613.1|EB815613
EST:     AGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGG                         GTTTCTGTTGGCTACTTCATCACTGATCTTGAAATGATCTTCTGGCTGTAT
genomic: AGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGGgtactgaatc ... tgcttgacagGTTTCTGTTGGCTACTTCATCACTGATCTTGAAATGATCTTCTGGCTGTAT
EST: gi|38687922|gb|CK144953.1|CK144953
EST:     AGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGG                         GTTTCTGTTGGCTACTTCATCACTGATCTTGAAATGATCTTCTGGCTGTAT
genomic: AGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGGgtactgaatc ... tgcttgacagGTTTCTGTTGGCTACTTCATCACTGATCTTGAAATGATCTTCTGGCTGTAT
EST: gi|78076717|gb|DV505151.1|DV505151
EST:     AGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGG                         GTTTCCTGTTGGCTACTTCATCACTG
genomic: AGGGGCCTATTACATTCCGTAATTCGATAATATCCACTTCTGCATTGGGGgtactgaatc ... tgcttgacagGTTTC-TGTTGGCTACTTCATCACTG