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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTGCGGCGGGCTCTGCCCCGGCTTGAACACCGTCATCCGTGAGCTTGTCTGCGGCCTGTATGACATGTACGGCGTCACCAGTGTCGTTGGCATAGAGgtgaggactgaggagcttttactatgctctcatcttgcgaaaaaagttatttttttattattattctttcgcatgtgtagtttacaatgcatcgatcatt...

Basic information

species Zea mays
transcript GRMZM2G132069_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132069_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 4
CACCTGCGGCGGGCTCTGCCCCGGCTTGAACACCGTCATCCGTGAGCTTGTCTGCGGCCTGTATGACATGTACGGCGTCACCAGTGTCGTTGGCATAGAGgtgaggactgaggagcttttactatgctctcatcttgcgaaaaaagttatttttttattattattctttcgcatgtgtagtttacaatgcat-cgatcatt------
||||||||| || |||||||| ||  | ||||| || ||||| |||||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||||||    | |   | | ||| | ||        ||| | ||    ||| || ||| ||   || ||    ||||| | |     | |  ||  |  ||||      
CACCTGCGGTGGCCTCTGCCCTGGACTTAACACTGTTATCCGCGAGCTTGTGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAGgtga---ttaacttgttcttattttgtcacggctttgtgtaac---ttagttctttgttgggatgctaa-acatgttttgggagtagttgatatgtacattttagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32849146|gb|CD988827.1|CD988827
EST:     ACGGCGTCACCAGTGTCGTTGGCATTGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACGGTCGCGTTGACACCGAGA
genomic: ACGGCGTCACCAGTGTCGTTGGCATAGAGgtgaggactg ... tgatgcgtagGGTGGATACAAGGGTTTCTATTCCAAAAACACGGTCGCGTTGACACCGAGA