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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAGAGCGCATTTCCCAGAAAAGATGCCCCGTCGGCTCCTCCGAAGCATGCTTTCTTAAGAATAAATTCAAGCAGGTTGCTTCTAGAAGAGgtaaaatatattttaaaactcaatgtactttgttaattacttaatttcctcttctccctatgtcaactggatgctttacgtgaaatagtatactcttttgtattctgcttcttggacttgtctcaaactattatgattgcag

Basic information

species Zea mays
transcript GRMZM2G131070_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131070_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g43560.1 (Oryza sativa), 5'ss of exon 4
CTTAAGAGCGCATTTCCCAGAAAAGATGCCCCGTCGGCTCCTCCGAAGCATGCTTTCTTAAGAATAAATTCAAGCAGGTTGCTTCTAGAAGAGgtaaaatatattttaaaactcaatgtactttgttaattacttaatttcctcttctccctatgtcaactggatgctttacgtgaaatagtatactcttttgtattctgcttcttggacttgt----ctcaaactattatgattgcag
||||||   | ||||||||||||||    |||  | ||||| ||||||||||| || | ||||||||||||||||||| |||||||||||||||| |    |                   | |||  |||  |||||||   |||    | |||||||                  ||| || | ||  ||||  |  || | || |||  ||    ||  || | || || ||||||
CTTAAGCAGGAATTTCCCAGAAAAGGAATCCCCCCTGCTCCACCGAAGCATGCCTTTTCAAGAATAAATTCAAGCAGGGTGCTTCTAGAAGAGgttagccgt-------------------tatgtatattgattaatttttgctttgttcgatgtcaa------------------atactacattcagttgtgcttagcctttttgaccggtggttcttgaaatgttttgtttgcag