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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTAGTCTACCCATATTTCCCCTTGGTGCATTTGCAGTCGAAAAGTTGGCATTCAACAATCTCATTAGTGATCCTgtaagcgcacacctccttcctataaagcttactttttctggtgtccaggttctcattaacagtttatgcattttccatattgtggatggacggcgaacta...

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 4
CCTTAGTCTACCCATATTTCCCCTTGGTGCATTTGCAGTCGAAAAGTTGGCATTCAACAATCTCATTAGTGATCCTgtaagcgcacacctcctt---cctataaagcttactttttctggtgtccag-gttctcattaacagtttatgcattttccatattgtggatggacggcgaacta
 |||||||| ||    || ||||| |||||||||||||| |||||||||||||| |||||| | |||| |||| ||||||||  |  ||| |||   ||| ||      |  | | || || | |||   |   || ||  |||||    |||| ||||||  | |||||          
TCTTAGTCTGCCTGCTTTCCCCCTGGGTGCATTTGCAGTTGAAAAGTTGGCATTTAACAATGTTATTACTGATGCTgtaagcagaggccttcttaaccctgtaccttaaaactctactagtctacagtacttaaataaatggtttacaagttttacatatttggtatggatcattc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149108049|gb|EE292403.2|EE292403
EST:     GTGCATTTGCAGTCGAAAAGTTGGCATTCAACAATCTCATTAGTGATCCT                         GCTACTACCTGTTTTCACATCCTTTTTACAACATTTGAAATTGTATATCCA
genomic: GTGCATTTGCAGTCGAAAAGTTGGCATTCAACAATCTCATTAGTGATCCTgtaagcgcac ... cctttttcagGCTACTACCTGTTTTCACATCCTTTTTACAACATTTGAAATTGTATATCCA