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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGGATGAATCAAGTAGACCTGATGATGTAATTTCAGCTGCACAGAGGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctgtttcctgttaaattttaccattctcttttgtgaaaatagtggacacttgcaccagttaggtttttttttgtgctgtgagaagcacagaaa...

Basic information

species Zea mays
transcript GRMZM2G130548_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130548_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g51290.1 (Oryza sativa), 5'ss of exon 4
AAAGAAGGATGAATCAAGTAGACCTGATGATGTAATTTCAGCTGCACAGAGGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctgttt-----cctgttaaattttaccattctcttttg--tgaaaatagtggacactt--gcaccagttagg---tttttttttgtgctgtgaga--agcacagaaa------------------------------------------------
||  |||||||| |||  |||||| |||||||| || |||||||| ||||| |||||||| ||||||||||||| ||||||||| | ||| ||||||||||||||||||  ||      |  || ||  |||  |||||  | ||     || ||||   |  ||   | || | |||     ||| ||||  | ||| | |  ||     ||                                                 
AAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTGAACAAAATGGATCAAGAGCGTTTGAAAGTCTGGTTAACAAGgtattatctacttatggatccatttaaagttagaattcttctgtgaacagaagtagtcccctttttgtctcctgctagcgacctttctttttgggtgtcatatcagagtgcaacctacttatgtgttttaatctttggcacataacatttcaattcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67010741|gb|CO439490.1|CO439490
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGATGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|47961743|gb|CN844452.1|CN844452
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|58030053|gb|CX725480.1|CX725480
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACGAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|18649488|gb|BM498307.1|BM498307
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGNTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGCTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|18649240|gb|BM498059.1|BM498059
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         CTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGCTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|76292040|gb|DV031608.1|DV031608
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|101383449|gb|EB813780.1|EB813780
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTTTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|29945355|gb|CB815597.1|CB815597
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|91877108|gb|EB407065.1|EB407065
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|5439382|gb|AI820303.1|AI820303
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|211067668|gb|FL012968.1|FL012968
EST:     GTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATNCT-GTTAACAAG                         TTTAAGAGTTCGAACCCA-GGCGCTCAATTCTGGGAGAAG-TAGAGGTTGA
genomic: GTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAAT-CTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGG-AGGAGGTAGAGGTTGA
EST: gi|29945353|gb|CB815596.1|CB815596
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|60341409|gb|DN208382.1|DN208382
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|16926976|gb|BM080044.1|BM080044
EST:     GGGACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|211067665|gb|FL012965.1|FL012965
EST:     ACATTGAGCAAAATGGATCAAAAGCGTTTTGAGAATCNTTGTTAACCAAG                         TTTAAGAGTTCGAACCCAAGGCGCTC
genomic: ACATTGAGCAAAATGGATCAAAAGCGTTT-GAGAATC-TTGTTAAC-AAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTC
EST: gi|45567900|gb|CK985803.1|CK985803
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|32831864|gb|CD971542.1|CD971542
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTATGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|22489673|gb|BU049596.1|BU049596
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|18649960|gb|BM498779.1|BM498779
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|9732626|gb|BE511378.1|BE511378
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|87153170|gb|DY397959.1|DY397959
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|50337773|gb|CO532899.1|CO532899
EST:     GGTACATTGAGCAAAATGGATCANAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGA
EST: gi|211470172|gb|FL446046.1|FL446046
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAG-----TGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|211320303|gb|FL454022.1|FL454022
EST:     GGTACATTGAGCAAAATGGWTCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|91877109|gb|EB407066.1|EB407066
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAAACCCA-GGCGCTNCA-TTCTGGAGG
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAA-CCCAAGGCGCT-CAATTCTGGAGG
EST: gi|50337772|gb|CO532898.1|CO532898
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|32865321|gb|CF005003.1|CF005003
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|211067669|gb|FL012969.1|FL012969
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTGTGAG--TG--GT-AACAAG                         TTTAAGAGTTCGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAA
EST: gi|18450405|gb|BM428683.1|BM428683
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGCTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|211023896|gb|FL457615.1|FL457615
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
EST: gi|19822487|gb|BQ048511.1|BQ048511
EST:     GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAG                         TTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA
genomic: GGTACATTGAGCAAAATGGATCAAAAGCGTTTGAGAATCTTGTTAACAAGgtattatctg ... catcgtgcagTTTAAGAGTTCGAACCCAAGGCGCTCAATTCTGGAGGAGGTAGAGGTTGAA