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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctttacaagtgacccaaaaatgatgtggctttgatgcaaaatcatgctgttgataaataaataggggagcaggattaaaattccgccttggcc...

Basic information

species Zea mays
transcript GRMZM2G130398_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130398_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 4
GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt---------taca-agtgacccaaaaatgatgtggctttgatgcaaaatca-tgctgttgataaataaataggggagcaggattaaaattccgccttggcc
||||| |||||||| ||||| || |||||||||||||| ||||| ||  | ||||||||||| |||||| | ||||||||||||||||   |||         |||| ||   | ||||  |  |  |  ||   || ||||  | | |  ||||| || ||  | |  || | | |    ||            
GGTGTGGAGAAGCTAGTAACTTCGAAGATGATGCTGGAGGGATCTAATAGGAGGATCCATTCAGTGCACTGGCACTCTGGCTTGgtaacatcttgcttccctgtacatagatcctcaaatgtattacgatttcagtgtaaaaaaagtacaattgatgaagaataaagcaaggatgttgtttata-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449736|gb|DR830786.1|DR830786
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211351921|gb|FL214813.1|FL214813
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|78089684|gb|DV518058.1|DV518058
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|149044661|gb|EE047635.2|EE047635
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|26455745|gb|CA827328.1|CA827328
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|71767052|gb|DR964989.1|DR964989
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211354329|gb|FL214829.1|FL214829
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211421483|gb|FL073183.1|FL073183
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCYGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|148949400|gb|EC894857.2|EC894857
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211351916|gb|FL214808.1|FL214808
EST:     GGAAGGATCAAACCGAAGGATCCATTCGGTGCACCNGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: GGAAGGATCAAACCGAAGGATCCATTCGGTGCACC-GTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211349511|gb|FL214797.1|FL214797
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|76913938|gb|DV165334.1|DV165334
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|37417861|gb|CF646590.1|CF646590
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|32862844|gb|CF002526.1|CF002526
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|32843121|gb|CD982802.1|CD982802
EST:     TGAAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|149081024|gb|EE170124.2|EE170124
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|9254592|gb|BE345075.1|BE345075
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|76289822|gb|DV029390.1|DV029390
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|78106940|gb|DV525358.1|DV525358
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|31364473|gb|CD448828.1|CD448828
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|31353269|gb|CD437626.1|CD437626
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|60351410|gb|DN218383.1|DN218383
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211351910|gb|FL214802.1|FL214802
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|71317411|gb|DR795418.1|DR795418
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211351918|gb|FL214810.1|FL214810
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|33771241|gb|CF273420.1|CF273420
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|60345448|gb|DN212421.1|DN212421
EST:     ATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: ATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|19770141|gb|BQ034862.1|BQ034862
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACC
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACC
EST: gi|28566562|gb|CB278210.1|CB278210
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATG
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATG
EST: gi|211354318|gb|FL214818.1|FL214818
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|29947590|gb|CB816734.1|CB816734
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211351922|gb|FL214814.1|FL214814
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|149009039|gb|EE041221.2|EE041221
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|148945160|gb|EC890360.2|EC890360
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211349508|gb|FL214794.1|FL214794
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|60349038|gb|DN216011.1|DN216011
EST:     TGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211303552|gb|FL073177.1|FL073177
EST:     GAAGGATCAAACCGAAGGATTCCATTTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGC
genomic: GAAGGATCAAACCGAAGGAT-CCATT-CGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGC
EST: gi|148983025|gb|EE028929.2|EE028929
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|148933477|gb|EC877180.2|EC877180
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|76280505|gb|DV020073.1|DV020073
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|149106947|gb|EE188848.2|EE188848
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|148949401|gb|EC894858.2|EC894858
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211354323|gb|FL214823.1|FL214823
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211349514|gb|FL214800.1|FL214800
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCA
EST: gi|211354330|gb|FL214830.1|FL214830
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211303549|gb|FL073174.1|FL073174
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTT
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTT
EST: gi|211354327|gb|FL214827.1|FL214827
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAAYTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211303550|gb|FL073175.1|FL073175
EST:     TGGAAGGATCAAACCGAAG-ATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGGACCAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGG-ACCAA
EST: gi|37361328|gb|CF602617.1|CF602617
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211349504|gb|FL214790.1|FL214790
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211303551|gb|FL073176.1|FL073176
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GTTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|78081016|gb|DV509428.1|DV509428
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211349507|gb|FL214793.1|FL214793
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGC
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGC
EST: gi|211354331|gb|FL214831.1|FL214831
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
EST: gi|211351915|gb|FL214807.1|FL214807
EST:     TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTG                         GCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA
genomic: TGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctt ... tcatctgcagGCTGTTGCTGGTTTAGCAGCAGATGGCAGGCAAATTGTTTCAAGGACCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGTCGAGAAGCTGGTAACCTCAAAGATGATGCTGGAAGGATCAAACCGAAGGATCCATTCGGTGCACCGTCACTCTGGCTTGgtaatgcctttacaagtgacccaaaaatgatgtggctttgatgcaaaatcatgctgttgataaataaataggggagcaggattaaaattccgccttggcc

- - - - - - - - - - - - - - - - - TGGAAG