1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATGATCACCTCGGAACATCTCGTGACACTTCTTGCAATTGTTCCCAAGTACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaaattttggttgtgcttgtctgcttgttagaacctcccaaatcgacatattttttcttataactttccttttgaagagaattgaataatgtt...
species | Zea mays |
transcript | GRMZM2G128995_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTG GTACCTAGGTCCTCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTACEST: gi|19351863|gb|BM896395.1|BM896395
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCA-GCTATGAGAAAATTGACACATTCGTG GTACCTAGGTCCTCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTACEST: gi|40334835|gb|CK368905.1|CK368905
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
EST: CCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTG GTACCTAGGTCCTCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTACEST: gi|60358961|gb|DN225934.1|DN225934
genomic: CCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTACEST: gi|22491457|gb|BU051380.1|BU051380
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTG GTACCTAGGTCEST: gi|78076481|gb|DV504915.1|DV504915
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTC
EST: AAGCTATGAGAAAATTGACACATTCGTG GTACNTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTACEST: gi|67013699|gb|CO442448.1|CO442448
genomic: AAGCTATGAGAAAATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTG GTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTACEST: gi|71427969|gb|DR809019.1|DR809019
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
EST: AATTGACACATTCGTG GTCCCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
genomic: AATTGACACATTCGTGgtaaggttaa ... aattttatagGTACCTAGGTCATCTAAAAAGCTCTATGAAGACAATGAATATGCTCTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGATCACCTCGGAACATCTCGTGACACTTCTTGCAATTGTTCCCAAGTACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATTCGTGgtaaggttaaattttggttgtgcttgtctgcttgttagaacctcccaaatcgacatattttttcttataactttccttttgaagagaattgaataatgtt
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