Sequence
atgc intronic sequence ATGC exonic sequenceTGTCTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgatgttatgccttatagaaagtcttattgatgtagtgtcttctacctctgagctttaatctcaatccttgctattgcttttttatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 7
TGTCTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgatgttat-------gccttatagaaagtcttattgatgta-gtgtcttctacctctg---agctttaatctcaatccttgctattgcttttttatgcag
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TGTCAATGAAAATACTTTGATGCAACACAAGGTTGCTCTTCCACCTGGCGCTATGGGGAAAATAAGTTACATCGCCCCAGCTGGTCAATATAGCCTGCAGgttagtggatgctatcagtatcactttatcccatgtcctattgatctgcatgcattctaactttgcttaaccttg-tatggaaccctgcttttgctataa-atgcag
upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G78900.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTCTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgatgttatgccttatagaaagtcttattgatgta-gtgtcttctacctctgag-ctttaatctc---aatccttgctattgcttttttatgcag-----------------------------------------------------------------------------------------
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TGTCTTTGAGAACACTTTGATGAATCACCTCGTTGCCCTTCCTCCGGATGCCATGGGGAAGATCACTTACATTGCTCCAGCTGGTCAATATTCGCTTAAGgtt---tgactttaagtttccctcaaacagttatgaataaatacgtttcaaactttttcttccttgatttctttgaattcaacgtttgagttaatatatggctaacttgatcaattggtaatcacttcctgttgtagatcatgtttggcttgttgctaataattgtttgtcggtgattttcatttctcag
upper sequence: GRMZM2G128877_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 7
TGTCTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgatgttatgccttatagaaagtcttattgatgtagtgtcttctacct--ctgagcttt--aatctcaatccttgctattgcttttttatgcag--
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TGTCTTTGAGAACAGTTTAATGCAGCACCATGTTGCCCTTCCTCCTGATGCTATGGGAAAGATCACGTATGTTGCACCAGCTGGTCAATACTCGTTGAAGgtttgtt--tgtcaaactttgttgccttgcctttttttcttaggttggttggtgggttcagtttgggaattaccagccttacctataggttacagttaacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116813623|gb|EC856086.1|EC856086EST: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAG GACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAATTTTACCATG
genomic: CTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgat ... ttttatgcagGACACAGTGCTAGAATTGGAATTTCAGGGCATAAAAAAGAATTTTACCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCTTTGAGAACACATTGATGCAGCACCATGTTGCTCTTCCACCGGGTTCTATGGGGAAAATAAGTTACATTGCACCAGCTGGTCAGTACAACCTTCAGgttagttgatgttatgccttatagaaagtcttattgatgtagtgtcttctacctctgagctttaatctcaatccttgctattgcttttttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG