1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCACGACATCTTTGCCGATCACGAAGATCCCAAGCCCAACAGGTCAAGGAGATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctgagccattctggtagctcttaatacacatcgtggtggctccaaactctactgaacaactgtcgttatctttgttaacag
species | Zea mays |
transcript | GRMZM2G128491_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|32828662|gb|CD968340.1|CD968340
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAGCAEST: gi|87157807|gb|DY402596.1|DY402596
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|76287576|gb|DV027144.1|DV027144
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|78106237|gb|DV524655.1|DV524655
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|71307158|gb|DR789750.1|DR789750
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|148956639|gb|EC902493.2|EC902493
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|211435716|gb|FL461639.1|FL461639
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: AAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGMCAGCCCAGTGAAAMCAEST: gi|78114333|gb|DV532722.1|DV532722
genomic: AAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|12968693|gb|BG265639.1|BG265639
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCGGACTATGGCAGCTCTGCTGCTCAGTCACCAATGAAAAATGCAAAC GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAACACAGTGAAAACAEST: gi|71430885|gb|DR811935.1|DR811935
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|211018202|gb|FL215892.1|FL215892
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTEST: gi|71430884|gb|DR811934.1|DR811934
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTT
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|78118764|gb|DV537148.1|DV537148
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|32829298|gb|CD968976.1|CD968976
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|22715254|gb|BU197664.1|BU197664
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|22819528|gb|BU499618.1|BU499618
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|78083802|gb|DV512195.1|DV512195
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|76936903|gb|DV174954.1|DV174954
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|71327882|gb|DR800570.1|DR800570
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|78083801|gb|DV512194.1|DV512194
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATACAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCGGACATTGACAGCACAGTGAAAACAEST: gi|32828948|gb|CD968626.1|CD968626
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|148956638|gb|EC902492.2|EC902492
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCGGACATTGACAGCACAGTGAAAACAEST: gi|211018194|gb|FL215884.1|FL215884
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: AAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACAEST: gi|78118763|gb|DV537147.1|DV537147
genomic: AAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
EST: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAAT GTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
genomic: GATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctg ... ttgttaacagGTGAGCTCCTTCTCGTTTGGAGAGGCCGACATTGACAGCACAGTGAAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACGACATCTTTGCCGATCACGAAGATCCCAAGCCCAACAGGTCAAGGAGATCAGACTATGGCAGCTCTGCTGCTCAGTCACCAGTGAAAAATGCAAATgtactgcctgagccattctggtagctcttaatacacatcgtggtggctccaaactctactgaacaactgtcgttatctttgttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT