1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGATTGTGATGAGCACAAGAGTTTGTGCAGCAAGTATGGAGTTTCCGGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagcgcgtgtttaaatttttccatatcctttgtttaccaagttctgtgaattctgacagaaattcctttggcaaattag
species | Zea mays |
transcript | GRMZM2G128171_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGTATCNAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTWGCTGAATTTCTCAATACTGAEST: gi|211249326|gb|FL145204.1|FL145204
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGA
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAEST: gi|211249337|gb|FL145215.1|FL145215
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACA
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTEST: gi|211251557|gb|FL145220.1|FL145220
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACT
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGAEST: gi|211242633|gb|FL145173.1|FL145173
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGA
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCEST: gi|211247093|gb|FL145191.1|FL145191
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCC
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAEST: gi|211242629|gb|FL145169.1|FL145169
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAA
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGGAAGCCCTTGCTGAATTTCTCAATACTGEST: gi|211244868|gb|FL145188.1|FL145188
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAG-AAGCCCTTGCTGAATTTCTCAATACTG
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTEST: gi|78117464|gb|DV535851.1|DV535851
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCT
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGAEST: gi|211244858|gb|FL145178.1|FL145178
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGA
EST: GGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCC-AAAATA GTATGAAGGACAACGCACTGCAEST: gi|211247098|gb|FL145196.1|FL145196
genomic: GGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAA-Agtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCA
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCEST: gi|211249329|gb|FL145207.1|FL145207
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGC
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTTGCNGAATTTCTCAATACTGAEST: gi|211249334|gb|FL145212.1|FL145212
genomic: GG-TATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGA
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGAEST: gi|211251558|gb|FL145221.1|FL145221
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGA
EST: GTATCCAACAATCCAATGGTTCCCGGAAAGGATCCTTGGAGCCCCAAAAA GTATGAAGGACAACGCACTGCAGEST: gi|211249328|gb|FL145206.1|FL145206
genomic: GTATCCAACAATCCAATGGTTCCCG-AAAGGATCCTTGGAGCCC-AAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAG
EST: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAA GTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGA
genomic: GGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagc ... ggcaaattagGTATGAAGGACAACGCACTGCAGAAGCCCTTGCTGAATTTCTCAATACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATTGTGATGAGCACAAGAGTTTGTGCAGCAAGTATGGAGTTTCCGGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagcgcgtgtttaaatttttccatatcctttgtttaccaagttctgtgaattctgacagaaattcctttggcaaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG