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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGTCTGGCCTTCAACTGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttcgcttccatcgtgctctcctgctactctgcacataggtagctgctgtggcaaggggagctgaaccgtggtgacatctctctctctctctctctctctctctccgtgcag

Basic information

species Zea mays
transcript GRMZM2G127949_T07
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127949_T07 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g63770.1 (Oryza sativa), 5'ss of exon 4
TGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGTCTGGCCTTCAACTGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttcgcttccatcgtgctct-cctgctactctgcac------ataggtagct-gctgtggcaaggggagc-tg-aaccgtggtg----acatctctctctctctctctctctctctctccgtgcag--------------------------------------------
|||| ||||| |||||||| |||||||||||||| || || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||     | |  | |   |   |||  ||  | |  |  |||      |  |  |  | || | | ||  |  |   || | ||||| ||     || |  | | ||    |  |    |   |  |||| |                                            
TGGATGGGCTACTGGGCCCGTACTGGAAGGCGGCCGGACTCGCCTTCAACTGCACGTTCCTCCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtcaaattcctttcctccccaactcaaccaaccaaccatcactctcccactgtcacttcgcagcgccagtgtaaatatgtagccgtgctgctgcgcaacagtgtgtcgtggtgacagattgggtttgtgcggatgggctgaaaacctgaccgataatttggtggtgttttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37416255|gb|CF645778.1|CF645778
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71439891|gb|DR820941.1|DR820941
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|149106248|gb|EE291943.2|EE291943
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|89247965|gb|DY619751.1|DY619751
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|12047053|gb|BF729192.1|BF729192
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|50333849|gb|CO528975.1|CO528975
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|88755867|gb|DY540008.1|DY540008
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|74238272|gb|DT646186.1|DT646186
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|93016578|gb|EB642098.1|EB642098
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148993471|gb|EE033790.2|EE033790
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|76283871|gb|DV023439.1|DV023439
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|149000738|gb|EE037956.2|EE037956
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|91877700|gb|EB407657.1|EB407657
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148940213|gb|EC884981.2|EC884981
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71431743|gb|DR812793.1|DR812793
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148991111|gb|EE032561.2|EE032561
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|50333523|gb|CO528649.1|CO528649
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|93017325|gb|EB642845.1|EB642845
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71426467|gb|DR807517.1|DR807517
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|50323790|gb|CO518916.1|CO518916
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|50325029|gb|CO520155.1|CO520155
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71766076|gb|DR964013.1|DR964013
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148960340|gb|EE153599.2|EE153599
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|101383844|gb|EB813977.1|EB813977
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71770227|gb|DR968164.1|DR968164
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|93013574|gb|EB639094.1|EB639094
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|149065677|gb|EE286799.2|EE286799
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71433856|gb|DR814906.1|DR814906
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|211097193|gb|FL034705.1|FL034705
EST:     ATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: ATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|149112165|gb|EE295087.2|EE295087
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|19351820|gb|BM896352.1|BM896352
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGATCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71439386|gb|DR820436.1|DR820436
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|93014020|gb|EB639540.1|EB639540
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|71312081|gb|DR792563.1|DR792563
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|149077991|gb|EE166727.2|EE166727
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|149084117|gb|EE173519.2|EE173519
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|78091637|gb|DV520011.1|DV520011
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|74245666|gb|DT653580.1|DT653580
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|89758211|gb|DY687480.1|DY687480
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148938783|gb|EC883120.2|EC883120
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148981006|gb|EE027369.2|EE027369
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCCGGCTGGACAAGCGGACATGGACGTACT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACC-GGCTGGACAAGCGGACATGGACGTACA
EST: gi|149012077|gb|EE042497.2|EE042497
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148967257|gb|EE018458.2|EE018458
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|88757663|gb|DY541804.1|DY541804
EST:     TGCACGTTTCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|148970317|gb|EE021187.2|EE021187
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
EST: gi|78180917|gb|DV551290.1|DV551290
EST:     TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAG                         CAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT
genomic: TGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttc ... ctccgtgcagCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCGGGTCTGGCCTTCAACTGCACGTTCCTGCTGTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGgtgggtcttcgcttccatcgtgctctcctgctactctgcacataggtagctgctgtggcaaggggagctgaaccgtggtgacatctctctctctctctctctctctctctccgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT