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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGGCCCGTTGATATAGATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtctttagcattagacttgtttacatgttttcccttgatgaatcgctgtttgtttgagttatgaaacgctcagttataaactagttagaaataata...

Basic information

species Zea mays
transcript GRMZM2G127453_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127453_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g56890.1 (Oryza sativa), 5'ss of exon 3
GTCTGGCCCGTTGATATAGATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtctttagcattagacttgtttacatgtt-ttcccttgatgaatcgctgtttgtttgagttatgaaacgctcagttataaa-ctagttagaaataata-
|| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| || |  |   ||| | || ||| |  |  |||| |||  |||  |   | |  || ||||||  ||| ||   ||       ||  | ||       |  || 
GTTTGGCCCCTTGATATAGAGATGAAGTTCCTGGAGCCATTTGGACGGGAACTACATTCCATGAAAAAGgtaatgca--agcttgaggctt-tccatctgttgttctgttgcagctgcacgattggtttgaagtataaagtacttgaaaccaactcaagccttgtgtgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32936461|gb|CF041280.1|CF041280
EST:     GCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: GCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|31909649|gb|CD651024.1|CD651024
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|113667155|gb|DW831402.1|DW831402
EST:     CCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAAGTA
genomic: CCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAA-GTA
EST: gi|211167601|gb|FL258650.1|FL258650
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGGCAAACAAGTA
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGG-CAAACAAGTA
EST: gi|211245830|gb|FL313150.1|FL313150
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|32870084|gb|CF009766.1|CF009766
EST:     AACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: AACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|211156223|gb|FL476869.1|FL476869
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|78180798|gb|DV551171.1|DV551171
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|8665358|gb|BE186174.1|BE186174
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|211167596|gb|FL258645.1|FL258645
EST:     ATATGAAGTTCCTAGATCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|211167597|gb|FL258646.1|FL258646
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTA
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTA
EST: gi|8401369|gb|BE057003.1|BE057003
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|5525193|gb|AI861191.1|AI861191
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|211104453|gb|FL478968.1|FL478968
EST:     ATATGAAGTTCCTAGATCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|31909179|gb|CD650789.1|CD650789
EST:     ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|166465671|gb|EG323069.1|EG323069
EST:     CGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
genomic: CGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTATGGCAAACAAGTAG
EST: gi|211167599|gb|FL258648.1|FL258648
EST:     ATATGAAGTTCCTAGATCCATTTGGACGGGAACTACATTCAATGAAAAAA                         TTCATGGACAAATCGTGCAGTGTTATGGACTCATCTA
genomic: ATATGAAGTTCCTAGAGCCATTTGGACGGGAACTACATTCAATGAAAAAAgtgagtcttt ... aattttgcagTTCATGGACAAATCGTGCAGTGTTATGGACTCATCTA