Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaatatatgtgtaccttcttcacaccttacaagatcgatgtgtatcttaaattaaaagcaaaaaaaaaagttatcactatacaatatgcatacta...

Basic information

species Zea mays
transcript GRMZM2G127134_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757221|gb|DY541362.1|DY541362
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|78122971|gb|DV541355.1|DV541355
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|50335696|gb|CO530822.1|CO530822
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|88752665|gb|DY536806.1|DY536806
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|78088276|gb|DV516669.1|DV516669
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|94476398|gb|EB705356.1|EB705356
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|76292337|gb|DV031905.1|DV031905
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|93013964|gb|EB639484.1|EB639484
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|93016177|gb|EB641697.1|EB641697
EST:     ATGAGATGTCCGGTTACCCCCACAGACATTGGCCACATCAACAAGTTCAG                         G-TTTTGGCCAAGGCATGCATGAAGGGGCAGGACGGCCCCGGCGGATCGTT
genomic: ATGAGATGTCC-GTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCG-T
EST: gi|93013947|gb|EB639467.1|EB639467
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|149079411|gb|EE168388.2|EE168388
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|71306900|gb|DR789604.1|DR789604
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|50333317|gb|CO528443.1|CO528443
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|74236265|gb|DT644179.1|DT644179
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|148955217|gb|EC900743.2|EC900743
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|76927243|gb|DV171193.1|DV171193
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|71767933|gb|DR965870.1|DR965870
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|88746990|gb|DY531131.1|DY531131
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|149112066|gb|EE295007.2|EE295007
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|101385634|gb|EB814865.1|EB814865
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|71757756|gb|DR955693.1|DR955693
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|71765079|gb|DR963016.1|DR963016
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|78110836|gb|DV529234.1|DV529234
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|148963668|gb|EE014729.2|EE014729
EST:     CATGAGATGTCCGTTAACACGACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|74234780|gb|DT642694.1|DT642694
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|91056734|gb|EB167152.1|EB167152
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|94476941|gb|EB705899.1|EB705899
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|148935734|gb|EC879777.2|EC879777
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|74237024|gb|DT644938.1|DT644938
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|78113840|gb|DV532229.1|DV532229
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|89764009|gb|DY690971.1|DY690971
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|76010433|gb|DT937603.1|DT937603
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|148972659|gb|EE023620.2|EE023620
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|33466948|gb|CF243997.1|CF243997
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|101383499|gb|EB813805.1|EB813805
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|84969398|gb|DW467836.1|DW467836
EST:     ATGAGATGTCCGTTAACCCCACAGACA-TTGCCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: ATGAGATGTCCGTTAACACCACAGACATTTG-CCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|149085128|gb|EE174633.2|EE174633
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|71306925|gb|DR789617.1|DR789617
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|148955218|gb|EC900744.2|EC900744
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|50322536|gb|CO517662.1|CO517662
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|86475121|gb|DY241491.1|DY241491
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|149061235|gb|EE157500.2|EE157500
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|101396800|gb|EB820326.1|EB820326
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|148928193|gb|EE284700.2|EE284700
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|78079776|gb|DV508188.1|DV508188
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|88750518|gb|DY534659.1|DY534659
EST:     ATGAGATGTCCGTTAACACCACAGACA-TTGCCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGCCCCCGGCGGATCGTC
genomic: ATGAGATGTCCGTTAACACCACAGACATTTG-CCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|84970016|gb|DW468399.1|DW468399
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|71422728|gb|DR805806.1|DR805806
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
EST: gi|76290055|gb|DV029623.1|DV029623
EST:     CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAG                         GTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC
genomic: CATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 11

AAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTCGGCGGGGAAGAAGAGCCCGTGGATTATGTGCACGCCAGCAGAAGTGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 18

AAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTCGGCGGGGAAGAAGAGCCCGTGGATTATGTGCACGCCAGCAGAAGTGGAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 66

AAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTCGGCGGGGAAGAAGAGCCCGTGGATTATGTGCACGCCAGCAGAAGTGGAG


Block sizes: 20 (upstream exon), 30 (downstream exon)
Score: 1

AAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaata ... caaataaaagGTTTTTGGACAAGGCATGCATGAAGGCGCAGGACGGCCCCGGCGGATCGTCGGCGGGGAAGAAGAGCCCGTGGATTATGTGCACGCCAGCAGAAGTGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTGTGCCCGTCGACGGCCTCCACGCAGGCGGTCGCAGGTTCTACCGTCCATGAGATGTCCGTTAACACCACAGACATTTGCCACATCAACAAGTTCAGgtaccaaatatatgtgtaccttcttcacaccttacaagatcgatgtgtatcttaaattaaaagcaaaaaaaaaagttatcactatacaatatgcatacta

- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa