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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagggtatttagccgtgatatacatgacattacatgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag

Basic information

species Zea mays
transcript GRMZM2G127050_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 5'ss of exon 4
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagggtatttagccgtgatatacatgacattacatgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |  ||   ||     |   ||          || | ||         | ||   | | |||||  |          ||||||||| | || | | |||     | ||  |  | |  |                                 
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGAGAAATGgta-catatgcctt--ttaccctgagactaa--------aaactattc--------ttttcctctgagatatgaac---------tgctatttattaaagagaaaatccaagaaatgatattgacaag--------------------------------

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 2
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagg-gtatttagccgtgatatacatgacattacatgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag
||||||||||| || ||||||||  | ||||| |||||||||||||| || || |||||||| || ||||| || |||||||| |||||||| ||||| |||| |  ||  |   |    ||||   ||  | || | |  ||  | || | |   || | |  |  |   |    |    |||||                                                                           
GATCCTCGTCTCTCTTGCTTTGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACCAATCTTGCTTACACACCTCCTGAATATTTAAGAAACGgtaactaac--tcccttctcgaca---tttactttttatatataatataataactcgtttctctcaatcggaatgcttttgttacag--------------------------------------------------------------------------

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 2
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagggtatttagccgtgatatacatgacattacatgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag
||||| ||||| || ||||||||  | ||||| |||||||||||||| || || |||||||| || ||||| || |||||||| |||||||| |||||||||| |  ||  |   |    ||||         |||||| | || ||||       | | || |  | ||   |   |    |  |  | |||    |                                                              
GATCCCCGTCTCTCTTGCTTTGGTTTTATGAAGAACAGCAGGGATGGTAAGAGTTATAGCACCAATCTTGCTTACACACCTCCTGAATATTTAAGAAATGgtaaccaac--tcccttctcgaca-------ttttcttttactttttta-------tgtataacgataattctctcaatcagatttcttttttttccag-------------------------------------------------------------

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagggtatttagccgtgatatacatgacattaca-tgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag
||||||||||| ||||| |||||| ||||||| ||||| |||||||| ||||| |||||||||||  | || |||||||| || |||||| | ||||||||||  |  | | || | |||     |  |||  |       ||| |  | | |   ||   | |    || || | |   || || ||  | ||  ||||   |  |||| |  || |       ||||    |||   | |||                 
GATCCTCGTCTCTCATGTTTTGGCTTGATGAAGAACAGTAGGGATGGTAAAAGTTATAGCACAAATTTAGCTTATACACCACCTGAATATCTAAGAAATGgta--aagcaacttgtttatactcta--tagatt-------attatacaatcaacata--aaactcaaatttata-gtttttgcactgaaacttcttgaagcaaagatggatctcagt------gtgataaattttgtgttgcag----------------

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 4
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagggtatttagccgtgatatacatgacattacatgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag
||||| || ||||| ||||||||  |||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||||||||| || ||| | ||||||||||    |  | || |   |     | ||   ||   ||| ||| ||   |||   |  |||    |  |||  ||   | |  ||  || ||  ||    |    |                                                     
GATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAGCAGAGATGGAAAAAGTTACAGCACAAATCTTGCCTATACACCTCCTGAGTATCTAAGAAATGgtaaagaatcaattgttcttttttgaatt---ctcacttgtattatt--attattattattattttt--tatggatattagtgtattgtacttgttgtgtttcattt-----------------------------------------------------

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 4
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagggtatttagccgtgatatacatgacattacatgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag
|| || || |||||||| |||||| |||||||||| || || ||||||||||| ||||||||||| ||||| || |||||||| |||||| | ||||||||||     |   | ||||     | |  ||    | | | || |||  | ||| | | |   |        ||| |  ||| | ||| |      ||||| |    |||||  | || |                                         
GACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAAGAAATGgtacttctc---taatctgaatgatatctatttgtttgtcaaatgtc-atttaagttttccgg--------tactt--cataaaatgttg-----tgaaactgatctggctccccttat-----------------------------------------

upper sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ20301 (Selaginella moellendorffii), 5'ss of exon 4
GATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGgtagcatacgatttatctatgacaaacttagccttctttgaattgtttagttagggtatttagccgtgatatacatgacattacatgctatttactgaaaatagaatggctaacattttcctaatgatgggatttccatggcaacctatgctttcttcag
||||| || || || || || || |||||||| |||||| | || || || ||||||||||| ||| | |||||||||||||| ||||| ||| |||  ||||     |    |  || || ||   |  |  |||   |  ||||||  |    || |  ||                                                                                                 
GATCCGCGCCTCTCTTGTTTCGGTCTGATGAAGAACAGCCGAGACGGCAAGAGCTATAGCACGAACTTGGCATATACACCTCCTGAATACTTGCGAACAGgtaaagctct-cgtgcctttgtcaccttgcgtattcaaagctttgttttct----gtttgcag-------------------------------------------------------------------------------------------------