Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctctcgcgttccagatggtccagtccagcattttccttccacgatagcacttcccctgacgagtgtttttctttcag

Basic information

species Zea mays
transcript GRMZM2G126765_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126765_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g53160.1 (Oryza sativa), 5'ss of exon 4
ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaa------------agcctctcgcgttccagatggtccagtcc----agcattttccttccacgatagcacttcccctgacgagtgtttttc---tttcag
|||| || || || ||||| |||||||||||||||||||||||||||             ||| |  | | | || |||   ||| |      |    |||   | || |  |   |  |   |  |   | ||   |   ||||||
ACGTAAGGAATCAACCGGTGCTCATCCACTGCAAGAGAGGCAAGgtagctatatctatttagcattgcacatccctgatatcccattttcttgaaaccttttgctacatgggaattcgacggtttcctgatattccacatgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18174219|gb|BM349607.1|BM349607
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|31558116|gb|CD527328.1|CD527328
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTAA
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18170840|gb|BM340680.1|BM340680
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|31558117|gb|CD527329.1|CD527329
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18167985|gb|BM337825.1|BM337825
EST:     ACGTGAAAAACCAACCGGTCCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGT-CCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18175011|gb|BM350399.1|BM350399
EST:     CAGCCGGTCGTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: CAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|78093024|gb|DV521398.1|DV521398
EST:     ACGTGAGAAACCAGCTGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18163480|gb|BM333319.1|BM333319
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18166488|gb|BM336327.1|BM336327
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18176420|gb|BM351381.1|BM351381
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|37388689|gb|CF631556.1|CF631556
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18167235|gb|BM337074.1|BM337074
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18161992|gb|BM331831.1|BM331831
EST:     ACGTGAGAAACCAACCGGTCCTCATCCAATGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGAATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18175417|gb|BM350752.1|BM350752
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18168798|gb|BM338638.1|BM338638
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|28986278|gb|CB351056.1|CB351056
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18169478|gb|BM339318.1|BM339318
EST:     AAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: AAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18173977|gb|BM349365.1|BM349365
EST:     AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18167555|gb|BM337394.1|BM337394
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|28986707|gb|CB351270.1|CB351270
EST:     CCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: CCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|17929863|gb|BM266823.1|BM266823
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18162825|gb|BM332664.1|BM332664
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|16921811|gb|BM075311.1|BM075311
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|17930139|gb|BM267099.1|BM267099
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18170685|gb|BM340525.1|BM340525
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|16920825|gb|BM074849.1|BM074849
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18168498|gb|BM338338.1|BM338338
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18167487|gb|BM337326.1|BM337326
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|76283506|gb|DV023074.1|DV023074
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18170266|gb|BM340106.1|BM340106
EST:     ACGTAAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18165198|gb|BM335037.1|BM335037
EST:     AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: AACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|78093023|gb|DV521397.1|DV521397
EST:     ACGTGAGAAACCAGCTGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18172194|gb|BM347582.1|BM347582
EST:     ACGTGAGAAACCAGCCGGTCATCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18164282|gb|BM334121.1|BM334121
EST:     ACGT-AAAAACACAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAAC-CAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|17929626|gb|BM266586.1|BM266586
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18168877|gb|BM338717.1|BM338717
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|18167709|gb|BM337549.1|BM337549
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
EST: gi|16922990|gb|BM075982.1|BM075982
EST:     ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAG                         CACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC
genomic: ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 46 (downstream exon)
Score: 28

ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCCTGTCCTCCGTGTTCGACGAGTACCTGCACTTCGCGGCGGCGAAGGCGA


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 14

ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCCTGTCCTCCGTGTTCGACGAGTACCTGCACTTCGCGGCGGCGAAGGCGA


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 35

ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCCTGTCCTCCGTGTTCGACGAGTACCTGCACTTCGCGGCGGCGAAGGCGA


Block sizes: 8 (upstream exon), 47 (downstream exon)
Score: 2

ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctc ... tttctttcagCACCGGACTGGCTGCGTCGTCGGATGCCTGAGGAAGCTGCAGAAGTGGTGCCTGTCCTCCGTGTTCGACGAGTACCTGCACTTCGCGGCGGCGAAGGCGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGTGAGAAACCAGCCGGTCCTCATCCACTGCAAGAGAGGCAAGgtaaagcctctcgcgttccagatggtccagtccagcattttccttccacgatagcacttcccctgacgagtgtttttctttcag

- - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - GAGAGG