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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaatatcttttctaaaatcattgtacctatcttgtttatcttggtttgatctgatatcatttttatgttcgtaccaactactctaaataaattaagctctttccaaattcag

Basic information

species Zea mays
transcript GRMZM2G126517_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126517_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g39420.1 (Oryza sativa), 5'ss of exon 4
ATCGCATCTGGTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgt----gccgaaatatcttttctaaaatcattgtacctatcttgtttatc-ttggtttgat-------ctgatat-catttttat--------gttcgtaccaacta-----ctctaaataaa--ttaagctctttccaaattcag
 | || |||||||| || || |||||||||||||| ||||||||||| || ||||| |||||    ||| |||     || ||    |  ||     ||  || | | || ||| ||||||        |  | | ||| ||| |        ||| || ||||  |     ||||| || ||  | ||| |  |  |||||||||
GTGGCCTCTGGTGGTAATGGTGCAACAACAGTTTCTGCCACTATGTTTTTCGCTCATAAGgtcagagccaaaaacatcttactgctcttgttactgttaatttatctttccttgatttgatagcctttttcttgttcatctttgttacatgtagttggtgccaatcattcatctctatatcaaactaaagttgctctcaaattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211075732|gb|FL350793.1|FL350793
EST:     TGGCAACGGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGG
genomic: TGGCAACGG-CGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGG
EST: gi|67038503|gb|CO464823.1|CO464823
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211098559|gb|FL329018.1|FL329018
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGANGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|149082843|gb|EE172069.2|EE172069
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211522432|gb|FL327537.1|FL327537
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGANGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211469725|gb|FL319610.1|FL319610
EST:     GTNGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATWGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211193875|gb|FL364459.1|FL364459
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|149015839|gb|EE045506.2|EE045506
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211370472|gb|FL346947.1|FL346947
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTAC
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTAC
EST: gi|211152952|gb|FL361222.1|FL361222
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211177454|gb|FL359127.1|FL359127
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCAT
EST: gi|211327335|gb|FL364053.1|FL364053
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGA
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGA
EST: gi|211483892|gb|FL352027.1|FL352027
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACA
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTT-GTTACTGGGGGCATTGGAGGTGTGCATAGACA
EST: gi|211088384|gb|FL316163.1|FL316163
EST:     TGGCAACGGCGCAACAACAGTTTCGGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTG
genomic: TGGCAACGGCGCAACAACAGTTTCGG-CCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTG
EST: gi|211103326|gb|FL320696.1|FL320696
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGTGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|31355893|gb|CD440250.1|CD440250
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211385441|gb|FL308637.1|FL308637
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|78085709|gb|DV514102.1|DV514102
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211526420|gb|FL361968.1|FL361968
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGG
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGG
EST: gi|211023235|gb|FL319676.1|FL319676
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211115835|gb|FL357318.1|FL357318
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGT
EST: gi|211386536|gb|FL356614.1|FL356614
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211216455|gb|FL358323.1|FL358323
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211472964|gb|FL344042.1|FL344042
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTTGTTACTGGGGGC
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTT-GTTACTGGGGGC
EST: gi|211522504|gb|FL328840.1|FL328840
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTAC
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTAC
EST: gi|211267860|gb|FL346397.1|FL346397
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211229181|gb|FL350913.1|FL350913
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAC                         GTTGGCATACCAGTTTTT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTT
EST: gi|211370106|gb|FL332774.1|FL332774
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGG
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGG
EST: gi|211404920|gb|FL353800.1|FL353800
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGGCATAGACA
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTG-CATAGACA
EST: gi|211258208|gb|FL352264.1|FL352264
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGG
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGG
EST: gi|74236392|gb|DT644306.1|DT644306
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211338223|gb|FL361344.1|FL361344
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGC
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGC
EST: gi|211420492|gb|FL364949.1|FL364949
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|211526578|gb|FL367182.1|FL367182
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|31355559|gb|CD439916.1|CD439916
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|71764027|gb|DR961964.1|DR961964
EST:     GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
genomic: GTGGCAACGGCGCAACAACAGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGGCATACCAGTTTTTGTTACTGGGGGCATTGGAGGTGTGCATAGACAT
EST: gi|101391313|gb|EB817591.1|EB817591
EST:     GGCAACGGCCGCA-CAACCAGTTTCGGCCACTATGTTCTTTGCTCACAAG                         GTTGGGC-TACCAGTTTTTGTTACTGG
genomic: GGCAACGGC-GCAACAAC-AGTTTCGGCCACTATGTTCTTTGCTCACAAGgtgccgaaat ... ccaaattcagGTTGG-CATACCAGTTTTTGTTACTGG