Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttctgcatactctgttcatttctgcatcattgactgttgctgctgcgcatattgatggactgtgagatgtaatcttatggtttgctgcag

Basic information

species Zea mays
transcript GRMZM2G126361_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126361_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g51029.1 (Oryza sativa), 5'ss of exon 3
GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttctgcatactctgttcatttctgcat-cattgactgttgctgctgcgcatattgatggactgtgagatgtaatcttatggtttgctgcag
|||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| |||||   |||    | |   ||||||| ||||| | |||   || ||| || || ||| | |  || |||||| ||  | |    ||||||||| |   
GTGGACTCACATTCTTTGCTCCAAGCGAGGAGAGGCTTGAGTCTGGATTGTACAGCAGGAGCTACCTAGAGAACCAAATGGCCGTAGCTCTTGGTGGAAGgtgggttttagtgaaa---tgttcatatctgcgtacatgtgctattgttgttgtgcaaagtcttgaactgtgtgagcttac---atggtttgcag---

upper sequence: GRMZM2G126361_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G02200.1 (Glycine max), 5'ss of exon 3
GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctct---ttctgcatactctgttcatttctgcatcattgactgttgctgctgcgcatattgatggactgtgagatgtaatcttatggtttgctgcag--
|||| |||||||| |||||||| || ||||| ||||| || |||||||||||||| || || || ||||| || || |||||||| ||| | ||||| ||||          |  ||| | | |||   || |      ||   | |||    |  || || | ||  | | | | ||  |  ||  |||  | ||   |  
GTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGTTACCTTGAAAATCAGATGGCTGTTGCCTTGGGTGGAAGgtcagtggaacacaacatgcacagttaccttgtttgattttagattttgacatt-tgc-tagtcattcattcttatatcaacactactggcctactcttgag

upper sequence: GRMZM2G126361_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G02100.1 (Glycine max), 5'ss of exon 3
GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgt--gctctttctgca----tactctgttcatttctgcatcattgactgttgc---tgctgcgcatattgatggactgtgagatgtaatcttatggtttgctgcag
|||| |||||||| |||||||| |||||||| ||||| || |||||||||||||| || || || ||||| || || |||||||| ||||| ||||| ||||  |  |    ||||    |||| ||||   |  || ||  |||||  ||||   |  | |     || |   |||   |  |||  ||   ||| |        
GTGGTCTCACATTTTTTGCTCCCAGCGAAGAGAGGCTCGAGTCTGGATTGTACAGTAGAAGTTACCTTGAAAATCAGATGGCTGTTGCCCTGGGTGGAAGgtcagtgcaacgtgcacaattactttgtttgatcttggatt-ttgacatttgcaagtcattcattctttaacaaactcc-acttgttgtcaattggctaatg----

upper sequence: GRMZM2G126361_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G50250.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttctgcatactctgttcatttctgcatca-ttgactgttgctgctgcgcatattgatg-gactgtgagatgtaatcttatggtttgctgcag------------
|||| ||||| || |||||||||||||||||||| || || |||||||||||||| |||||||| |||||||| ||||||||||| || ||||| || ||||    |         |||    | |     ||  |        |||    | |  | |  | |   | | ||  |    ||||     | || ||               
GTGGGCTCACTTTTTTTGCTCCAAGCGAAGAAAGACTTGAGTCTGGATTGTACAGTAGGAGCTACCTTGAGAATCAAATGGCTGTTGCACTTGGCGGAAGgttagttagtaatggcctccacgcctcgtcacaaaagccagtctttgaatatacagagaagggtttaattatgttaaaccatctctatctctgttgtgttggctatgtcag

upper sequence: GRMZM2G126361_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT5G42270.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctcttt--ctgcatactctgttcatttctgcatcattgactgttgctgctgcgcatattgatggactgtgagatgtaatcttatggtttgctgcag
|||| ||||| || || ||||| |||||||| |||||||| || |||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||  | |    ||| | ||| |  |  |||     |    || |  |  |   | |   |   |||     || | |  |  | ||||||         
GTGGGCTCACCTTTTTCGCTCCTAGCGAAGAGAGGCTAGAGTCCGGATTGTATAGCAGAAGCTACCTTGAGAACCAAATGGCTGTTGCACTTGGTGGAAGgtagtttacaactg-aaactgtactggttttgatttacaagagtagtcttcgagtgttaaacaatgtttattgtgtttca--cctatggtag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116822651|gb|EC866067.1|EC866067
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|24934350|gb|CA452568.1|CA452568
EST:     ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|32832563|gb|CD972241.1|CD972241
EST:     ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|33090896|gb|CF050890.1|CF050890
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|18166249|gb|BM336088.1|BM336088
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTAAGAAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|13198172|gb|BG354188.1|BG354188
EST:     TACAGTAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGCTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|28911358|gb|BM340383.2|BM340383
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|28911249|gb|BM336639.2|BM336639
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|71759679|gb|DR957616.1|DR957616
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|18164694|gb|BM334533.1|BM334533
EST:     GTAGCCCTTGGTGGCAGG                         GGTTGCTGAGAAGGTGATCTTTGGCCAAGGCAACGTGACAACAGGAGCTT
genomic: GTAGCCCTTGGTGGCA-Ggtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTT
EST: gi|13149600|gb|BG319922.1|BG319922
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|211089719|gb|FL375369.1|FL375369
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|33092826|gb|CF052820.1|CF052820
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|33095834|gb|CF055828.1|CF055828
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|71299675|gb|DR785845.1|DR785845
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|33096758|gb|CF056732.1|CF056732
EST:     ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|24934378|gb|CA452596.1|CA452596
EST:     ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|211197976|gb|FL446528.1|FL446528
EST:     ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|32916795|gb|CF021607.1|CF021607
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|18166703|gb|BM336542.1|BM336542
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|86470277|gb|DY236647.1|DY236647
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|32916856|gb|CF021668.1|CF021668
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|32849001|gb|CD988682.1|CD988682
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|32848890|gb|CD988571.1|CD988571
EST:     ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: ACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|110216144|gb|EC898042.1|EC898042
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGTTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|110208211|gb|EC890108.1|EC890108
EST:     AACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATTTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|18165075|gb|BM334866.1|BM334866
EST:     GCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACGACGTGACAACAGGAGCTTC
genomic: GCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|148990798|gb|EE032214.2|EE032214
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|28911275|gb|BM338697.2|BM338697
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|32849008|gb|CD988689.1|CD988689
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCTAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|71761686|gb|DR959623.1|DR959623
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|9742814|gb|BE518962.1|BE518962
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|28911216|gb|BM335452.2|BM335452
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|18165923|gb|BM335762.1|BM335762
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|17931504|gb|BM268464.1|BM268464
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|71768955|gb|DR966892.1|DR966892
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|149096865|gb|EE182659.2|EE182659
EST:     AAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|33094055|gb|CF054049.1|CF054049
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|149062825|gb|EE157543.2|EE157543
EST:     TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: TACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
EST: gi|18163505|gb|BM333344.1|BM333344
EST:     AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAG                         GGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC
genomic: AGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 68

GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTCCAACGACTTCATGCAAGTGTCACGTGTCGCAAGGCAGATGGTCGAAAGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 332

GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTCCAACGACTTCATGCAAGTGTCACGTGTCGCAAGGCAGATGGTCGAAAGA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 86

GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTCCAACGACTTCATGCAAGTGTCACGTGTCGCAAGGCAGATGGTCGAAAGA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 169

GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttc ... tttgctgcagGGTTGCTGAGGAGGTGATCTTTGGCCAAGACAACGTGACAACAGGAGCTTCCAACGACTTCATGCAAGTGTCACGTGTCGCAAGGCAGATGGTCGAAAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGACTCACATTCTTTGCTCCAAGCGAAGAAAGGCTAGAATCTGGATTGTACAGCAGGAGCTATCTTGAGAACCAAATGGCTGTAGCCCTTGGTGGCAGgtgctctttctgcatactctgttcatttctgcatcattgactgttgctgctgcgcatattgatggactgtgagatgtaatcttatggtttgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG